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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 122 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 37 22

Repositories

Showing 10 of 178 repositories
  • cellmaps_coembedding Public
    idekerlab/cellmaps_coembedding’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Mar 11, 2025
  • cellmaps_utils Public
    idekerlab/cellmaps_utils’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Mar 11, 2025
  • KEGGscape Public Forked from kozo2/kgmlreader

    A Cytoscape app for importing KGML(KEGG pathway XML)

    idekerlab/KEGGscape’s past year of commit activity
    Java 22 Apache-2.0 11 19 0 Updated Mar 8, 2025
  • Object_List_Page Public

    A simple list/index page for different kinds of objects

    idekerlab/Object_List_Page’s past year of commit activity
    TypeScript 0 0 0 0 Updated Mar 8, 2025
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Jupyter Notebook 8 2 1 0 Updated Feb 26, 2025
  • cansrmapp Public
    idekerlab/cansrmapp’s past year of commit activity
    Python 0 0 0 0 Updated Feb 19, 2025
  • cellmaps_pipeline Public
    idekerlab/cellmaps_pipeline’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Feb 15, 2025
  • cellmaps_generate_hierarchy Public
    idekerlab/cellmaps_generate_hierarchy’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Feb 15, 2025
  • cellmaps_imagedownloader Public
    idekerlab/cellmaps_imagedownloader’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Feb 10, 2025
  • test_cyweb_service_app Public
    idekerlab/test_cyweb_service_app’s past year of commit activity
    Python 1 0 0 0 Updated Feb 7, 2025
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