singularity-genometools

The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.

Pre-requisites

• Singularity v3.5.+.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

You will need to edit the script above to match your account on SyLabs.io.

Pulling from the repository

If you have the client installed and cannot build the image locally nor remotely, simply run

singularity pull library://icaoberg/default/genometools:v1.6.0

Disclaimer

I am nothing but a humble programmer creating the container for this wonderful app. The GenomeTools are being developed by Gordon Gremme, Sascha Steinbiss, Stefan Kurtz and others.

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Copyleft © 2019-2020 icaoberg at the Computational Biology Department in Carnegie Mellon University