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Yan Gao committed Apr 6, 2017
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Expand Up @@ -103,7 +103,7 @@ Read options:
-d --diff-rate [FLOAT] Maximum length difference ratio between read and reference. [0.04]
-x --mis-rate [FLOAT] Maximum error rate of mismatch within reads. [0.04]
-T --read-type [STR] Specifiy the type of reads and set multiple paramethers unless overriden.
-T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden.
[null] (Illumina Moleculo):
pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,1,2,2 -E1,1,1,1 -b0 -e0.30 -d0.30
ont2d (Oxford Nanopore): -i25 -l50 -m1 -M1 -O1,1,1,1 -E1,1,1,1 -b0 -e0.25 -d0.10
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