[nomenclature._sort_all_consensus_labels] API CHANGE return also sort… #52
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Codecov ReportAttention: Patch coverage is
❗ Your organization needs to install the Codecov GitHub app to enable full functionality. Additional details and impacted files@@ Coverage Diff @@
## master #52 +/- ##
==========================================
- Coverage 96.52% 96.44% -0.08%
==========================================
Files 52 52
Lines 13764 14056 +292
==========================================
+ Hits 13286 13557 +271
- Misses 478 499 +21
Flags with carried forward coverage won't be shown. Click here to find out more. ☔ View full report in Codecov by Sentry. |
….e. return 'sorted' duplicates
… consensus labels, tests
…into interface_selection
…actor shorten_AAs -> AA_format to allow consensus labels, tests
…sus labels, tests
…g private attributes)
…one), assert consensus_maps are len=top.n_residues, kwargs documented, tests
…gument, using _lexsort_consensus_ctc_labels
…A_format in frequency_sum_per_residue_names
…essions are now more informative, tests
… frequency_sum_per_residue_names
…ng DataFrame.groubpy, expose in the AP, expose in the APII
…agments can be string, also flareplot_attrs
…is not list of trajs but joined trajs, cli.interface adapted
…e edits for the html render)
…d since now there can be redunandies in the definitions
…nError but simply eliminate self-contacts. self_interface=True skips the elimination (instead of skipping the AssertionError) This follows 0f6a848 which now makes it easy for there to be self contacts (It was harder before to get such a case). The 02.Missing_Contacts.ipynb explains this in the self_interface section.
gph82
force-pushed
the
interface_selection
branch
from
5644876 to
2456f44
Compare
… sort the output of os.listdir
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
…ed indices