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gkoulouras authored Jun 15, 2022
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# Uniprot Annotation Downloader (version 1.04)
<b>Description:</b>

A standalone software tool for the retrieval of subcellular location, topology annotation, signal peptides, regions and amino acid modifications from UniProt database. The output is a compressed (.gz) ready-to-use file for the [Perseus software platform](https://maxquant.net/perseus/)
A standalone software tool that retrieves subcellular location, topology annotation, signal peptides, regions and amino acid modifications from UniProt database. The output is a compressed (.gz) ready-to-use file for the [Perseus software platform](https://maxquant.net/perseus/)

<b>Usage:</b>

You can simply download and run the <b>UniProt Annotation Downloader.exe</b> executable file which is located under the <b>bin/Release</b> directory of this GitHub repository. Additionally, two sample files are provided under the folder <b>dummy_files</b> for testing purposes. Press 'Select File', choose a file which contains a list of UniProt IDs, select or deselect any of the checkboxes (by default all options are selected and will be downloaded) and click 'Start'. The tool retrieves from [UniProt](https://www.uniprot.org/) all the selected annotation features of the given protein IDs in real-time.
You can simply download and run the <b>UniProt Annotation Downloader.exe</b> executable file which is located under the <b>bin/Release</b> directory of this GitHub repository. Additionally, two sample files are provided under the folder <b>dummy_files</b> for testing purposes. Press 'Select File', choose a file which contains a list of UniProt IDs, select or deselect any of the checkboxes (by default all options are selected and will be downloaded) and click 'Start'. The tool retrieves all the selected annotation features of the given protein IDs from [UniProt](https://www.uniprot.org/) in real-time.

![alt text](https://github.com/gkoulouras/uniprot-annotation-downloader/blob/master/UniProtAnnotDownloader.png)

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