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GenePattern

A Platform for Reproducible Bioinformatics

30 followers
San Diego, CA
http://genepattern.org/
@genepattern
@genepattern.org

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genepattern-notebook genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 44 13
genepattern-server genepattern-server Public

The GenePattern Server web application

HTML 36 18
genepattern-python genepattern-python Public

GenePattern Python Library

Python 11 4

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Showing 10 of 255 repositories

tfsites.PerturbTfSiteWithoutSideEffects Public

genepattern/tfsites.PerturbTfSiteWithoutSideEffects’s past year of commit activity

0 BSD-3-Clause 0 0 0 Updated Nov 4, 2025
common_module_code Public
This repository contains the shared code used by the GenePattern modules.

genepattern/common_module_code’s past year of commit activity

0 0 0 0 Updated Nov 3, 2025
tfsites.VisualizeTFSitesOnSequences Public
Farley lab collaboration

genepattern/tfsites.VisualizeTFSitesOnSequences’s past year of commit activity

0 0 0 0 Updated Oct 29, 2025
tfsites.CompareAcrossSeqsFromGenomicVariants Public
Compares the two seqs and reports the binding site effect on diff seqs

genepattern/tfsites.CompareAcrossSeqsFromGenomicVariants’s past year of commit activity

0 BSD-3-Clause 0 0 0 Updated Oct 29, 2025
tfsites.CompareAcrossSeqsFromDNA Public
Compares the two seqs and reports the binding site effect on diff seqs

genepattern/tfsites.CompareAcrossSeqsFromDNA’s past year of commit activity

0 BSD-3-Clause 0 0 0 Updated Oct 29, 2025
tfsites.FindTfSitesAlteredBySequenceVariation Public
Farley Lab UCSD Collaboration

genepattern/tfsites.FindTfSitesAlteredBySequenceVariation’s past year of commit activity

Shell 0 BSD-3-Clause 0 0 0 Updated Oct 29, 2025
genepattern-server Public
The GenePattern Server web application

genepattern/genepattern-server’s past year of commit activity

HTML 36 18 0 4 Updated Oct 22, 2025
module-toolkit Public

genepattern/module-toolkit’s past year of commit activity

Python 0 BSD-3-Clause 1 0 0 Updated Oct 20, 2025
tfsites.common_docker Public
Docker container for all the Farley lab tfsites suite of modules

genepattern/tfsites.common_docker’s past year of commit activity

Shell 0 0 0 0 Updated Oct 6, 2025
tfsites.NormalizeTfDNAAffinityData Public
Farley lab UCSD collaboration

genepattern/tfsites.NormalizeTfDNAAffinityData’s past year of commit activity

0 0 0 0 Updated Sep 17, 2025

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