Merge pull request #5549 from hexhowells/deconvolution-evaluation-tut…

…orial

New Evaluating Reference Data for Bulk RNA Deconvolution tutorial

CONTRIBUTORS.yaml

@@ -507,6 +507,10 @@ Camila-goclowski:
     email: [email protected]
     linkedin: camila-goclowski
 
+carloscheemendonca:
+    name: Carlos Chee Mendonça
+    joined: 2025-01
+
 charitylaw:
     name: Charity Law
     joined: 2018-09

topics/single-cell/tutorials/bulk-deconvolution-evaluate/workflows/deconv-eval-stage-1-create-data-tests.yml

@@ -0,0 +1,65 @@
+- doc: Test outline for deconv-eval-stage-1-create-data
+  job:
+    Metadata:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: None 1
+        path: test-data/Metadata_None 1.tabular
+      - class: File
+        identifier: None 2
+        path: test-data/Metadata_None 2.tabular
+      - class: File
+        identifier: None 3
+        path: test-data/Metadata_None 3.tabular
+    Expression Data:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: None 1
+        path: test-data/Expression Data_None 1.tabular
+      - class: File
+        identifier: None 2
+        path: test-data/Expression Data_None 2.tabular
+      - class: File
+        identifier: None 3
+        path: test-data/Expression Data_None 3.tabular
+    Awk- actual header (A): BEGIN { print "A_actual\tcell_type" } { print $0 }
+    Awk - infer header (A): BEGIN { print "0\tA_infer\t0" } NR > 1 {print $0 }
+    Awk - actual header (B): BEGIN { print "B_actual\tcell_type" } { print $0 }
+    Awk - infer header (B): BEGIN { print "0\tB_infer\t0" } NR > 1 {print $0 }
+  outputs:
+    Actual cell proportions (B):
+      element_tests:
+        None 1:
+          path: test-data/Actual cell proportions (B)_None 1.tabular
+        None 2:
+          path: test-data/Actual cell proportions (B)_None 2.tabular
+        None 3:
+          path: test-data/Actual cell proportions (B)_None 3.tabular
+    Pseudobulk (B):
+      element_tests:
+        None 1:
+          path: test-data/Pseudobulk (B)_None 1.tabular
+        None 2:
+          path: test-data/Pseudobulk (B)_None 2.tabular
+        None 3:
+          path: test-data/Pseudobulk (B)_None 3.tabular
+    Pseudobulk (A):
+      element_tests:
+        None 1:
+          path: test-data/Pseudobulk (A)_None 1.tabular
+        None 2:
+          path: test-data/Pseudobulk (A)_None 2.tabular
+        None 3:
+          path: test-data/Pseudobulk (A)_None 3.tabular
+    Actual cell proportions (A):
+      element_tests:
+        None 1:
+          path: test-data/Actual cell proportions (A)_None 1.tabular
+        None 2:
+          path: test-data/Actual cell proportions (A)_None 2.tabular
+        None 3:
+          path: test-data/Actual cell proportions (A)_None 3.tabular