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Cuterle v1.1.0
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@furacca furacca released this 12 Mar 18:23
· 110 commits to main since this release
v1.1.0
db74436

Update v1.1.0

This is the v1.1.0 stable release of Cuterle, a bioinformatic tool which return an output file (extracted_domain.fasta) containing every domain annotated by InterProScan (~.tsv file) via Pfam or SMART analysis from the list of protein (~.fasta file) submitted.

New features

  • Graphical output [optional] reporting a schematic visualization of the protein and its domains
  • Improved quality for the extraction method (now the program check how much results are given by Pfam and SMART, choosing the bigger one)
  • The analysis used to extract the domain (Pfam or SMAR) is now graphically reported
  • Summary table (first column Domain name, second column Domain's number found) is now graphically printed

Minor update

  • Comments reorganized
  • Requirements updated
  • Added two file ( ~.tsv and ~.fasta) as example to test the program

Bug fixes

Nothing to report (yet).

Installation

# Install requirements
pip install -r requirements.txt
# Run Cuterle and follow the monitor-printed istruction
python3 main.py
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