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modify post_proc
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friend1ws committed Feb 9, 2021
1 parent 191f17f commit 22a59d8
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion nanomonsv/post_proc.py
Original file line number Diff line number Diff line change
Expand Up @@ -342,7 +342,7 @@ def integrate_realignment_result_sbnd(tumor_sbnd_count_file, ctrl_sbnd_count_fil
key2contig[key] = F[3]

with open(tumor_sbnd_count_file, 'r') as hin, open(output_file, 'w') as hout:
header = "Chr_1\tPos_2\tDir_2\tContig\tSV_ID\tChecked_Read_Num_Tumor\tSupporting_Read_Num_Tumor"
header = "Chr_1\tPos_1\tDir_1\tContig\tSV_ID\tChecked_Read_Num_Tumor\tSupporting_Read_Num_Tumor"
if ctrl_sbnd_count_file is not None: header = header + "\tChecked_Read_Num_Control\tSupporting_Read_Num_Control"
print(header, file = hout)

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