create .R/Makevars so R can find jpeglib.h

fmicompbio · Jan 6, 2025 · 14d8c64 · 14d8c64
1 parent 98680d4
commit 14d8c64
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -78,7 +78,12 @@ jobs:
         run: |
           brew install harfbuzz
           brew install fribidi
-          brew install jpeg
+          brew install jpeg fftw
+          mkdir -p /Users/runner/.R
+          touch /Users/runner/.R/Makevars
+          echo 'export CPPFLAGS="-I/opt/homebrew/opt/jpeg/include"' >> /Users/runner/.R/Makevars
+          echo 'export LDFLAGS="-L/opt/homebrew/opt/jpeg/lib"' >> /Users/runner/.R/Makevars
+          echo 'export PKG_CONFIG_PATH="/opt/homebrew/opt/jpeg/lib/pkgconfig"' >> /Users/runner/.R/Makevars
           Rscript -e 'BiocManager::install(c("GenomeInfoDbData"), type = "source")'
           Rscript -e 'BiocManager::install(c("GenomicFeatures"), type = "source")'