Merge pull request #40 from fmicompbio/update-cache-action #304
Annotations
1 error and 22 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/[email protected]
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install macOS system dependencies
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Deploy
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install R package dependencies
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install R package dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install R package dependencies
‘smin’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
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Install R package dependencies
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
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Install R package dependencies
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
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Install R package dependencies
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
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Install R package dependencies
Unused variable ‘i’ declared at (1) [-Wunused-variable]
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Install remotes and RCurl
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "install-log".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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