R-CMD-check #290
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21 warnings
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-x86_64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.5:
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Install remotes and RCurl
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.5:
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Test coverage
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.5:
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Install macOS system dependencies
harfbuzz 10.0.0 is already installed and up-to-date.
To reinstall 10.0.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
fribidi 1.0.15 is already installed and up-to-date.
To reinstall 1.0.15, run:
brew reinstall fribidi
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Install R package dependencies
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-x86_64/contrib/4.5:
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Install R package dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.5:
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Install R package dependencies
‘smin’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
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Install R package dependencies
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
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Install R package dependencies
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
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Install R package dependencies
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install R package dependencies
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
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Install R package dependencies
Unused variable ‘i’ declared at (1) [-Wunused-variable]
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "install-log".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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