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Flatiron Institute

@simonsfoundation

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328 followers
New York City
https://flatironinstitute.org/

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CaImAn CaImAn Public

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Python 691 388
finufft finufft Public

Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

C++ 375 93
DeepFRI DeepFRI Public

Deep functional residue identification

Python 333 84
CaImAn-MATLAB CaImAn-MATLAB Public

Complete Matlab pipeline for large scale calcium imaging data analysis

MATLAB 258 149
NoRMCorre NoRMCorre Public

Matlab routines for online non-rigid motion correction of calcium imaging data

MATLAB 152 97
deepblast deepblast Public

Neural Networks for Protein Sequence Alignment

Python 128 23

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Showing 10 of 212 repositories

masala_public Public
The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.

flatironinstitute/masala_public’s past year of commit activity

C++ 6 AGPL-3.0 1 0 0 Updated Oct 3, 2025
neurosift Public
Browser-based NWB visualization and DANDI exploration

flatironinstitute/neurosift’s past year of commit activity

TypeScript 60 Apache-2.0 13 43 1 Updated Oct 3, 2025
nemos Public
NEural MOdelS, a statistical modeling framework for neuroscience.

flatironinstitute/nemos’s past year of commit activity

Python 106 MIT 11 124 (2 issues need help) 1 Updated Oct 3, 2025
binderhub Public Forked from jupyterhub/binderhub
Deterministically build docker images from a git repository + commit

flatironinstitute/binderhub’s past year of commit activity

Python 2 BSD-3-Clause 417 2 0 Updated Oct 2, 2025
figpack Public
A Python package for creating shareable, interactive, browser-based visualizations

flatironinstitute/figpack’s past year of commit activity

TypeScript 8 Apache-2.0 0 3 0 Updated Oct 2, 2025
walnuts Public
Within-orbit Adaptive Leapfrog No-U-Turn Sampler

flatironinstitute/walnuts’s past year of commit activity

C++ 18 MIT 1 14 (2 issues need help) 3 Updated Oct 2, 2025
CaImAn Public
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

flatironinstitute/CaImAn’s past year of commit activity

Python 691 GPL-2.0 388 73 (1 issue needs help) 11 Updated Oct 2, 2025
simple_ans Public
Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++

flatironinstitute/simple_ans’s past year of commit activity

Python 3 Apache-2.0 4 0 2 Updated Oct 2, 2025
jax-finufft Public
JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

flatironinstitute/jax-finufft’s past year of commit activity

Python 101 Apache-2.0 6 9 3 Updated Oct 2, 2025
baobzi Public
An adaptive fast function approximator based on tree search

flatironinstitute/baobzi’s past year of commit activity

C++ 16 Apache-2.0 4 13 1 Updated Oct 2, 2025

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