Merge pull request #2394 from eurodatacube/amazon-maps

chore: reimplement RECCAP2 Amazon Data Cube for non-stac access

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_10.png

@@ -0,0 +1 @@
+World-RECCAP2_9.png

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_11.png

@@ -0,0 +1 @@
+World-RECCAP2_9.png

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_12.png

@@ -0,0 +1 @@
+World-RECCAP2_9.png

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_2.png

@@ -0,0 +1 @@
+World-RECCAP2_1.png

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_3.png

@@ -0,0 +1 @@
+World-RECCAP2_1.png

app/public/data/trilateral/globalDataLayerImages/World-RECCAP2_4.png

@@ -0,0 +1 @@
+World-RECCAP2_1.png

app/public/eodash-data/stories/RECCAP/RECCAP2_1.md

@@ -0,0 +1,11 @@
+# Aboveground carbon
+
+Aboveground carbon [MgC/ha] (2011-2019) derived from different L-VOD indices calibrated to AGC using the ESA CCI biomass map. Provides data based on different filtering methods (smoothed, max and trend) as well as their mean.
+
+Source:
+
+SMOS-IC passive microwave satellite images L-VOD product (version 2.0), Wigneron, J.-P., Li, X., Frappart F., Fan L., Al-Yaari A., De Lannoy G., Liu X., Wang M., Le Masson E., Moisy C. (2021). SMOS-IC data record of soil moisture and L-VOD: historical development, applications and perspectives, Remote Sens. Env., 254, 112238, https://doi.org/10.1016/j.rse.2020.112238,
+
+Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of 'Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains' (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha

app/public/eodash-data/stories/RECCAP/RECCAP2_10.md

@@ -0,0 +1 @@
+RECCAP2_9.md

app/public/eodash-data/stories/RECCAP/RECCAP2_11.md

@@ -0,0 +1 @@
+RECCAP2_9.md

app/public/eodash-data/stories/RECCAP/RECCAP2_12.md

@@ -0,0 +1 @@
+RECCAP2_9.md

app/public/eodash-data/stories/RECCAP/RECCAP2_2.md

@@ -0,0 +1 @@
+RECCAP2_1.md

app/public/eodash-data/stories/RECCAP/RECCAP2_3.md

@@ -0,0 +1 @@
+RECCAP2_1.md

app/public/eodash-data/stories/RECCAP/RECCAP2_4.md

@@ -0,0 +1 @@
+RECCAP2_1.md

app/public/eodash-data/stories/RECCAP/RECCAP2_5.md

@@ -0,0 +1,11 @@
+# Secondary forest growth
+
+Annual aboveground carbon gain due to regrowth of secondary forests [MgC/ha/yr] (2011-2018). Derived from growth function of Heinrich et al. Nature Communications (2021) and secondary forest maps of Silva Junior et al. Scientific Data (2020)
+
+Source:
+
+Silva Junior, C. H. L., Heinrich, V. H. A., Freire, A. T. G., Broggio, I. S., Rosan, T. M., Doblas, J., Anderson, L. O., Rousseau, G. X., Shimabukuro, Y. E., Silva, C. A., House, J. I., & Aragão, L. E. O. C. (2020). Benchmark maps of 33 years of secondary forest age for Brazil. Scientific Data, 7. https://doi.org/10.5281/zenodo.3928660,
+
+Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of 'Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains' (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha/year

app/public/eodash-data/stories/RECCAP/RECCAP2_6.md

@@ -0,0 +1,9 @@
+# Deforested Biomass
+
+Annual aboveground carbon loss due to forest cover change [MgC/ha/yr] (2011-2018). Derived from Mapbiomas Amazonia Collection 2 (Landsat) data.
+
+Source:
+
+MapBiomas. (2021). Project MapBiomas—Collection 2 of Brazilian land cover and use map. https://mapbiomas.org/, Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of 'Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains' (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha/year

app/public/eodash-data/stories/RECCAP/RECCAP2_7.md

@@ -0,0 +1,12 @@
+# Degraded Biomass
+
+Annual aboveground carbon loss due to forest degradation, including fires but excluding edge effects [Mg C ha yr] (2011-2018). Derived from the JRC tropical moist forest maps (Landsat) of Vancutsem et al. Science Advances (2021)
+
+
+Source:
+
+Vancutsem, C., Achard, F., Pekel, J.-F., Vieilledent, G., Carboni, S., Simonetti, D., Gallego, J., Aragão, L. E. O. C., & Nasi, R. (2021). Long-term (1990–2019) monitoring of forest cover changes in the humid tropics. Science Advances, 7(10), eabe1603. https://doi.org/10.1126/sciadv.abe1603,
+
+Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of 'Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains' (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha/year

app/public/eodash-data/stories/RECCAP/RECCAP2_8.md

@@ -0,0 +1,9 @@
+# Edge biomass change
+
+Annual aboveground carbon loss due to forest degradation within 120 m from forest edges [MgC/ha/yr] (2011-2018). Derived from loss function of Silva Junior et al. Science Advances (2020).
+
+Source:
+
+Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of "Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains" (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha/year

app/public/eodash-data/stories/RECCAP/RECCAP2_9.md

@@ -0,0 +1,9 @@
+# Intact biomass change
+
+Annual aboveground carbon net change in old-growth forests excluding deforestation and degradation [MgC/ha/yr] (2011-2018). Derived from L-VOD AGC changes.
+
+Source:
+
+Fawcett, Dominic, Sitch, Stephen, Ciais, Philippe, Wigneron, Jean Pierre, Silva-Junior, Celso H. L., Heinrich, Viola, Vancutsem, Christelle, Achard, Frédéric, Bastos, Ana, Yang, Hui, Li, Xiaojun, Albergel, Clément, Friedlingstein, Pierre, & Aragão, Luiz E. O. C. (2022). Processed Data for Figures of "Declining Amazon biomass due to deforestation and subsequent degradation losses exceeding gains" (Version v1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7245450
+
+Units: MgC/ha/year

app/public/legends/trilateral/RECCAP2_10.png

@@ -0,0 +1 @@
+RECCAP2_9.png

app/public/legends/trilateral/RECCAP2_11.png

@@ -0,0 +1 @@
+RECCAP2_9.png

app/public/legends/trilateral/RECCAP2_12.png

@@ -0,0 +1 @@
+RECCAP2_9.png

app/public/legends/trilateral/RECCAP2_2.png

@@ -0,0 +1 @@
+RECCAP2_1.png

app/public/legends/trilateral/RECCAP2_3.png

@@ -0,0 +1 @@
+RECCAP2_1.png

app/public/legends/trilateral/RECCAP2_4.png

@@ -0,0 +1 @@
+RECCAP2_1.png

app/src/appConfig.js

@@ -197,6 +197,28 @@ module.exports = [
     tutorialText: '/data/trilateral/tutorials',
     challengesText: '/eodash-data/general/eodashboardhackathon',
     showNewsCarousel: true,
+    demoMode: {
+      cop28: [
+        {
+          poi: 'World-RECCAP2_1',
+        },
+        {
+          poi: 'World-RECCAP2_5',
+        },
+        {
+          poi: 'World-RECCAP2_6',
+        },
+        {
+          poi: 'World-RECCAP2_7',
+        },
+        {
+          poi: 'World-RECCAP2_8',
+        },
+        {
+          poi: 'World-RECCAP2_9',
+        },
+      ],
+    },
     newsCarouselitems: [
       {
         poi: 'Onset-ADD',

app/src/components/IndicatorData.vue

@@ -121,7 +121,7 @@ export default {
       dataLayerTimeFromMap: null,
       compareLayerTimeFromMap: null,
       lineChartIndicators: [
-        'E12', 'E12b', 'E8', 'N1b', 'N1', 'NASACustomLineChart', 'N3', 'N3b', 'SST',
+        'E12', 'E12b', 'E8', 'N1b', 'N1', 'NASACustomLineChart', 'XCubeCustomLineChart', 'N3', 'N3b', 'SST',
         'GG', 'E10a', 'E10a9', 'CV', 'OW', 'E10c', 'E10a10', 'OX',
         'N1a', 'N1c', 'N1d', 'N9', 'LWE', 'LWL',
         'E13o', 'E13p', 'E13q', 'E13r', 'CDS1', 'CDS2', 'CDS3', 'CDS4',
@@ -973,7 +973,7 @@ export default {
             clipMap: 'items',
           });
         } else if (['AQA', 'AQB', 'AQC', 'MOBI1', 'AQ3', 'REP4_1',
-          'REP4_4', 'REP4_6', 'ADO'].includes(indicatorCode)) {
+          'REP4_4', 'REP4_6', 'ADO', 'XCubeCustomLineChart'].includes(indicatorCode)) {
           // Rendering for fetched data
           // TODO: there are quite some dependencies on the expected structure of the data, so
           // it is not possible to show easily multiple parameters

app/src/components/map/layers.js

@@ -431,8 +431,8 @@ export function createLayerFromConfig(config, map, _options = {}) {
       // gets the current time entry from the store
       source = new XYZSource({
         attributions: config.attribution,
-        maxZoom: config.maxZoom,
-        minZoom: config.minZoom,
+        maxZoom: config.maxNativeZoom || config.maxZoom,
+        minZoom: config.minNativeZoom || config.minZoom,
         crossOrigin: typeof config.crossOrigin !== 'undefined' ? config.crossOrigin : 'anonymous',
         transition: 0,
         projection: getProjectionOl(config.projection),
@@ -455,8 +455,8 @@ export function createLayerFromConfig(config, map, _options = {}) {
     } else {
       source = new XYZSource({
         attributions: config.attribution,
-        maxZoom: config.maxZoom,
-        minZoom: config.minZoom,
+        maxZoom: config.maxNativeZoom || config.maxZoom,
+        minZoom: config.minNativeZoom || config.minZoom,
         crossOrigin: typeof config.crossOrigin !== 'undefined' ? config.crossOrigin : 'anonymous',
         projection: getProjectionOl(config.projection),
         transition: 0,

app/src/config/trilateral.js

@@ -17,6 +17,7 @@ import {
   evalScriptsDefinitions,
   parseStatAPIResponse,
   nasaStatisticsConfig,
+  xcubeAnalyticsConfig,
 } from '@/helpers/customAreaObjects';
 
 const wkt = new Wkt();
@@ -576,6 +577,54 @@ export const indicatorsDefinition = Object.freeze({
       },
     ],
   },
+  RECCAP2_1: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_1',
+  },
+  RECCAP2_2: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_1',
+  },
+  RECCAP2_3: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_1',
+  },
+  RECCAP2_4: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_1',
+  },
+  RECCAP2_5: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_5',
+  },
+  RECCAP2_6: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_6',
+  },
+  RECCAP2_7: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_7',
+  },
+  RECCAP2_8: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_8',
+  },
+  RECCAP2_9: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_9',
+  },
+  RECCAP2_10: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_9',
+  },
+  RECCAP2_11: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_9',
+  },
+  RECCAP2_12: {
+    themes: ['biomass'],
+    story: '/eodash-data/stories/RECCAP/RECCAP2_9',
+  },
   PRCTS: {
     indicatorSummary: 'Precipitation anomaly',
     themes: ['agriculture'],
@@ -995,7 +1044,63 @@ const getWeeklyDates = (start, end) => {
   return dateArray;
 };
 
+const createRECCAP2Config = (indicatorCode, name, variable, vmin, vmax, cbar, time, yAxis) => ({
+  properties: {
+    indicatorObject: {
+      indicator: indicatorCode,
+      dataLoadFinished: true,
+      country: 'all',
+      city: 'World',
+      siteName: 'global',
+      description: '',
+      indicatorName: name,
+      subAoi: {
+        type: 'FeatureCollection',
+        features: [],
+      },
+      aoiID: 'World',
+      time,
+      inputData: [''],
+      yAxis,
+      display: {
+        presetView: {
+          type: 'FeatureCollection',
+          features: [{
+            type: 'Feature',
+            properties: {},
+            geometry: wkt.read('POLYGON((-82.46 13.76,-33.24 13.76,-33.24 -22.58,-82.46 -22.58,-82.46 13.76))').toJson(),
+          }],
+        },
+        legendUrl: `legends/trilateral/${indicatorCode}.png`,
+        protocol: 'xyz',
+        tileSize: 256,
+        minZoom: 1,
+        url: `https://reccap2.api.dev.brockmann-consult.de/api/tiles/cop28~reccap2-9x108x139-0.0.1.zarr/${variable}/{z}/{y}/{x}?crs=EPSG:3857&time={time}&vmin=${vmin}&vmax=${vmax}&cbar=${cbar}`,
+        name,
+        dateFormatFunction: (date) => `${date}`,
+        labelFormatFunction: (date) => date,
+        minNativeZoom: 3,
+        maxNativeZoom: 5,
+        customAreaIndicator: true,
+        areaIndicator: xcubeAnalyticsConfig({ href: `https://reccap2.api.dev.brockmann-consult.de/api/timeseries/cop28~reccap2-9x108x139-0.0.1.zarr/${variable}?aggMethods=median` }),
+      },
+    },
+  },
+});
+
 export const globalIndicators = [
+  createRECCAP2Config('RECCAP2_1', 'Methods mean aboveground carbon (CCI RECCAP2)', 'AGC_LVOD_amazonia_methods_mean_crop', 0, 150, 'rain', getYearlyDates('2011-01-01', '2019-01-01'), 'Mg C/ha'),
+  createRECCAP2Config('RECCAP2_2', 'Smooth max aboveground carbon (CCI RECCAP2)', 'AGC_LVOD_amazonia_smooth_max_crop', 0, 150, 'rain', getYearlyDates('2011-01-01', '2019-01-01'), 'Mg C/ha'),
+  createRECCAP2Config('RECCAP2_3', 'Smooth mean aboveground carbon (CCI RECCAP2)', 'AGC_LVOD_amazonia_smooth_mean_crop', 0, 150, 'rain', getYearlyDates('2011-01-01', '2019-01-01'), 'Mg C/ha'),
+  createRECCAP2Config('RECCAP2_4', 'Trend mean aboveground carbon (CCI RECCAP2)', 'AGC_LVOD_amazonia_trend_mean_crop', 0, 150, 'rain', getYearlyDates('2011-01-01', '2019-01-01'), 'Mg C/ha'),
+  createRECCAP2Config('RECCAP2_5', 'Secondary forest growth (CCI RECCAP2)', 'SF_biomass_growth', 0, 2, 'YlGn', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_6', 'Deforestation (CCI RECCAP2)', 'deforested_biomass', 0, 5, 'YlOrRd', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_7', 'Degradation (CCI RECCAP2)', 'degraded_biomass', 0, 5, 'YlOrRd', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_8', 'Edge biomass change (CCI RECCAP2)', 'edge_biomass_change', 0, 5, 'YlOrRd', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_9', 'Methods mean intact biomass change (CCI RECCAP2)', 'intact_biomass_change_methods_mean', -5, 5, 'Spectral', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_10', 'Smooth max intact biomass change (CCI RECCAP2)', 'intact_biomass_change_smooth_max', -5, 5, 'Spectral', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_11', 'Smooth mean intact biomass change (CCI RECCAP2)', 'intact_biomass_change_smooth_mean', -5, 5, 'Spectral', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
+  createRECCAP2Config('RECCAP2_12', 'Mean intact biomass change trend (CCI RECCAP2)', 'intact_biomass_change_trend_mean', -5, 5, 'Spectral', getYearlyDates('2011-01-01', '2018-01-01'), 'Mg C/ha/year'),
   {
     properties: {
       indicatorObject: {

app/src/helpers/customAreaObjects.js

@@ -262,7 +262,7 @@ export const fetchCustomAreaObjects = async (
         requestBody[params[i]] = template(templateRe, requestBody[params[i]], templateSubst);
       }
       // Convert geojsons back to an object
-      if (params[i] === 'geojson') {
+      if (['geojson', 'coordinates'].includes(params[i])) {
         requestBody[params[i]] = JSON.parse(requestBody[params[i]]);
       }
     }
@@ -553,6 +553,49 @@ export const nasaTimelapseConfig = (
   ),
 });
 
+export const xcubeAnalyticsConfig = (
+  exampleEndpoint,
+  indicatorCode = 'XCubeCustomLineChart',
+) => ({
+  url: exampleEndpoint.href,
+  requestMethod: 'POST',
+  requestHeaders: {
+    'Content-Type': 'application/json',
+  },
+  requestBody: {
+    type: 'Polygon',
+    coordinates: '{coordinates}',
+  },
+  callbackFunction: (responseJson, indicator) => {
+    let ind = null;
+    if (Array.isArray(responseJson.result)) {
+      const data = responseJson.result;
+      const newData = {
+        time: [],
+        measurement: [],
+      };
+      data.forEach((row) => {
+        newData.time.push(DateTime.fromISO(row.time));
+        newData.measurement.push(row.median);
+      });
+      if (indicatorCode) {
+        // if we for some reason need to change indicator code of custom chart data
+        newData.indicator = indicatorCode;
+      }
+      ind = {
+        ...indicator,
+        ...newData,
+      };
+    }
+    return ind;
+  },
+  areaFormatFunction: (area) => (
+    {
+      coordinates: JSON.stringify(area.coordinates),
+    }
+  ),
+});
+
 export const nasaStatisticsConfig = (
   rescale = (value) => value / 1e14,
   indicatorCode = 'NASACustomLineChart',