Prepare data_test for package compilation (#9)

* Documentation of the visualisation and modelling modules * automatic documentation of the visualisation and modeling modules * minor changes to the documentation. Typos and minor bugs corrected. * feat: define a preliminar version of the minimal dataset needed to use the library, now stored in data/data.RDS (data/data_bu.RDS is backup of the old dataset). The prepare_data() function in seroprevalence_data process the dataset creating 5 columns needed for the analysis (age_mean_f, sample_size, prev_obs, prev_obs_lower and prev_obs_upper). This function is tested in test/test_minimal_data and implemented in test_individual_models. * fix: remove unused functions from all modules in preparation for a compiltation test. Remove the corresponding documentation files. Remove the folder R/stantmodels (it's redundant with inst/extdata/stanmodels). Update dependencies in DESCRIPTION (epitrix and cowplot removed). * fix: prepare data_test for compilation of the package Co-authored-by: megamezl <[email protected]>
epiverse-trace · Jan 25, 2023 · 5c0c8cd · 5c0c8cd
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diff --git a/data/dat_plot.RDS b/data/dat_plot.RDS
diff --git a/data/data.RData b/data/data.RData
diff --git a/data/data_test.R b/data/data_test.R
@@ -0,0 +1,15 @@
+#' Seroprevalence data on serofoi
+#'
+#' Data from a serological surveys
+#'
+#' @docType data
+#'
+#' @usage data_test
+#'
+#' @format An object of class \code{"cross"}; see \code{\link[qtl]{read.cross}}.
+#'
+#' @keywords datasets
+#'
+#' @examples
+#' data_test
+"serofoi"
diff --git a/data/tmp.txt b/data/tmp.txt