add an example

elttaes · Dec 21, 2022 · 1f6625f · 1f6625f
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diff --git a/.DS_Store b/.DS_Store
diff --git a/ESM-1b_Pretrain/.DS_Store b/ESM-1b_Pretrain/.DS_Store
diff --git a/ESM-MSA/.DS_Store b/ESM-MSA/.DS_Store
diff --git a/ESM-MSA/Results/.DS_Store b/ESM-MSA/Results/.DS_Store
diff --git a/Fitness/.DS_Store b/Fitness/.DS_Store
diff --git a/Fitness/flu/.DS_Store b/Fitness/flu/.DS_Store
diff --git a/Fitness/flu/alphafold/.DS_Store b/Fitness/flu/alphafold/.DS_Store
diff --git a/Fitness/flu/alphafold/alphafold/.DS_Store b/Fitness/flu/alphafold/alphafold/.DS_Store
diff --git a/Fitness/flu/alphafold/alphafold/common/.DS_Store b/Fitness/flu/alphafold/alphafold/common/.DS_Store
diff --git a/Fitness/flu/alphafold/alphafold/model/.DS_Store b/Fitness/flu/alphafold/alphafold/model/.DS_Store
diff --git a/Fitness/flu/alphafold/alphafold/model_ori/.DS_Store b/Fitness/flu/alphafold/alphafold/model_ori/.DS_Store
diff --git a/Fitness/flu/esm/.DS_Store b/Fitness/flu/esm/.DS_Store
diff --git a/Fitness/flu/esm/dataset/.DS_Store b/Fitness/flu/esm/dataset/.DS_Store
diff --git a/Fitness/flu/esm/esm/.DS_Store b/Fitness/flu/esm/esm/.DS_Store
diff --git a/Fitness/flu/esm/model/.DS_Store b/Fitness/flu/esm/model/.DS_Store
diff --git a/Fitness/flu/esm/test/.DS_Store b/Fitness/flu/esm/test/.DS_Store
diff --git a/Fitness/mutation/.DS_Store b/Fitness/mutation/.DS_Store
diff --git a/Fitness/mutation/af2/.DS_Store b/Fitness/mutation/af2/.DS_Store
diff --git a/Fitness/mutation/af2/alphafold/.DS_Store b/Fitness/mutation/af2/alphafold/.DS_Store
diff --git a/Fitness/mutation/af2/alphafold/common/.DS_Store b/Fitness/mutation/af2/alphafold/common/.DS_Store
diff --git a/Fitness/mutation/af2/alphafold/data/.DS_Store b/Fitness/mutation/af2/alphafold/data/.DS_Store
diff --git a/Fitness/mutation/af2/alphafold/model/.DS_Store b/Fitness/mutation/af2/alphafold/model/.DS_Store
diff --git a/Fitness/mutation/af2/alphafold/relax/.DS_Store b/Fitness/mutation/af2/alphafold/relax/.DS_Store
diff --git a/Fitness/mutation/esm/.DS_Store b/Fitness/mutation/esm/.DS_Store
diff --git a/Fitness/mutation/esm/BG_STRSQ_Abate2015/.DS_Store b/Fitness/mutation/esm/BG_STRSQ_Abate2015/.DS_Store
diff --git a/Fitness/mutation/esm/BLAT_ECOLX_Palzkill2012/.DS_Store b/Fitness/mutation/esm/BLAT_ECOLX_Palzkill2012/.DS_Store
diff --git a/Fitness/mutation/esm/DLG4_RAT_Ranganathan2012/.DS_Store b/Fitness/mutation/esm/DLG4_RAT_Ranganathan2012/.DS_Store
diff --git a/Fitness/sta/.DS_Store b/Fitness/sta/.DS_Store
diff --git a/Fitness/sta/alphafold/.DS_Store b/Fitness/sta/alphafold/.DS_Store
diff --git a/Fitness/sta/alphafold/alphafold/.DS_Store b/Fitness/sta/alphafold/alphafold/.DS_Store
diff --git a/Fitness/sta/alphafold/alphafold/common/.DS_Store b/Fitness/sta/alphafold/alphafold/common/.DS_Store
diff --git a/Fitness/sta/alphafold/alphafold/model/.DS_Store b/Fitness/sta/alphafold/alphafold/model/.DS_Store
diff --git a/Fitness/sta/alphafold/alphafold/model_ori/.DS_Store b/Fitness/sta/alphafold/alphafold/model_ori/.DS_Store
diff --git a/Fitness/sta/esm/.DS_Store b/Fitness/sta/esm/.DS_Store
diff --git a/Fitness/sta/esm/dataset/.DS_Store b/Fitness/sta/esm/dataset/.DS_Store
diff --git a/Fitness/sta/esm/model/.DS_Store b/Fitness/sta/esm/model/.DS_Store
diff --git a/Function/.DS_Store b/Function/.DS_Store
diff --git a/Function/antibiotic/.DS_Store b/Function/antibiotic/.DS_Store
diff --git a/Function/antibiotic/alphafold/.DS_Store b/Function/antibiotic/alphafold/.DS_Store
diff --git a/Function/antibiotic/alphafold/alphafold/.DS_Store b/Function/antibiotic/alphafold/alphafold/.DS_Store
diff --git a/Function/antibiotic/alphafold/alphafold/common/.DS_Store b/Function/antibiotic/alphafold/alphafold/common/.DS_Store
diff --git a/Function/antibiotic/alphafold/alphafold/model/.DS_Store b/Function/antibiotic/alphafold/alphafold/model/.DS_Store
diff --git a/Function/antibiotic/alphafold/alphafold/model_ori/.DS_Store b/Function/antibiotic/alphafold/alphafold/model_ori/.DS_Store
diff --git a/Function/antibiotic/esm/.DS_Store b/Function/antibiotic/esm/.DS_Store
diff --git a/Function/antibiotic/esm/drug/.DS_Store b/Function/antibiotic/esm/drug/.DS_Store
diff --git a/Function/metal/.DS_Store b/Function/metal/.DS_Store
diff --git a/Function/metal/alphafold/.DS_Store b/Function/metal/alphafold/.DS_Store
diff --git a/Function/metal/alphafold/alphafold/.DS_Store b/Function/metal/alphafold/alphafold/.DS_Store
diff --git a/Function/metal/alphafold/alphafold/common/.DS_Store b/Function/metal/alphafold/alphafold/common/.DS_Store
diff --git a/Function/metal/alphafold/alphafold/model/.DS_Store b/Function/metal/alphafold/alphafold/model/.DS_Store
diff --git a/Function/metal/esm/.DS_Store b/Function/metal/esm/.DS_Store
diff --git a/Function/metal/esm/1b/.DS_Store b/Function/metal/esm/1b/.DS_Store
diff --git a/Function/remote homology/.DS_Store b/Function/remote homology/.DS_Store
diff --git a/Function/remote homology/alphafold/.DS_Store b/Function/remote homology/alphafold/.DS_Store
diff --git a/Function/remote homology/alphafold/alphafold/.DS_Store b/Function/remote homology/alphafold/alphafold/.DS_Store
diff --git a/Function/remote homology/alphafold/alphafold/common/.DS_Store b/Function/remote homology/alphafold/alphafold/common/.DS_Store
diff --git a/Function/remote homology/alphafold/alphafold/model/.DS_Store b/Function/remote homology/alphafold/alphafold/model/.DS_Store
diff --git a/Function/remote homology/esm/.DS_Store b/Function/remote homology/esm/.DS_Store
diff --git a/Function/remote homology/esm/esm_1b/.DS_Store b/Function/remote homology/esm/esm_1b/.DS_Store
diff --git a/Function/remote homology/esm/esm_1b/pretrain_esm_1b/.DS_Store b/Function/remote homology/esm/esm_1b/pretrain_esm_1b/.DS_Store
diff --git a/Function/remote homology/esm/esm_1b/pretrain_esm_1b/esm/.DS_Store b/Function/remote homology/esm/esm_1b/pretrain_esm_1b/esm/.DS_Store
diff --git a/Function/remote homology/esm/esm_1b/random_esm_1b/.DS_Store b/Function/remote homology/esm/esm_1b/random_esm_1b/.DS_Store
diff --git a/Function/remote homology/esm/esm_1b/random_esm_1b/esm/.DS_Store b/Function/remote homology/esm/esm_1b/random_esm_1b/esm/.DS_Store
diff --git a/Function/remote homology/esm/msa_transformer/.DS_Store b/Function/remote homology/esm/msa_transformer/.DS_Store
diff --git a/Function/remote homology/esm/msa_transformer/pretrain_msa_transormer/.DS_Store b/Function/remote homology/esm/msa_transformer/pretrain_msa_transormer/.DS_Store
diff --git a/Function/remote homology/esm/msa_transformer/pretrain_msa_transormer/esm/.DS_Store b/Function/remote homology/esm/msa_transformer/pretrain_msa_transormer/esm/.DS_Store
diff --git a/Function/remote homology/esm/msa_transformer/random_msa_transormer/.DS_Store b/Function/remote homology/esm/msa_transformer/random_msa_transormer/.DS_Store
diff --git a/Structure/.DS_Store b/Structure/.DS_Store
diff --git a/Structure/contact_map/.DS_Store b/Structure/contact_map/.DS_Store
diff --git a/Structure/contact_map/ESM/.DS_Store b/Structure/contact_map/ESM/.DS_Store
diff --git a/Structure/contact_map/ESM/1b_mlp/.DS_Store b/Structure/contact_map/ESM/1b_mlp/.DS_Store
diff --git a/Structure/contact_map/ESM/msa_MLP/.DS_Store b/Structure/contact_map/ESM/msa_MLP/.DS_Store
diff --git a/Structure/contact_map/alphafold/.DS_Store b/Structure/contact_map/alphafold/.DS_Store
diff --git a/Structure/contact_map/alphafold/alphafold/.DS_Store b/Structure/contact_map/alphafold/alphafold/.DS_Store
diff --git a/Structure/contact_map/alphafold/alphafold/common/.DS_Store b/Structure/contact_map/alphafold/alphafold/common/.DS_Store
diff --git a/Structure/contact_map/alphafold/alphafold/model/.DS_Store b/Structure/contact_map/alphafold/alphafold/model/.DS_Store
diff --git a/Structure/contact_map/alphafold/alphafold/model_ori/.DS_Store b/Structure/contact_map/alphafold/alphafold/model_ori/.DS_Store
diff --git a/Structure/ssp/.DS_Store b/Structure/ssp/.DS_Store
diff --git a/Structure/ssp/alphafold/.DS_Store b/Structure/ssp/alphafold/.DS_Store
diff --git a/Structure/ssp/alphafold/alphafold/.DS_Store b/Structure/ssp/alphafold/alphafold/.DS_Store
diff --git a/Structure/ssp/alphafold/alphafold/common/.DS_Store b/Structure/ssp/alphafold/alphafold/common/.DS_Store
diff --git a/Structure/ssp/alphafold/alphafold/model/.DS_Store b/Structure/ssp/alphafold/alphafold/model/.DS_Store
diff --git a/Structure/ssp/esm/.DS_Store b/Structure/ssp/esm/.DS_Store
diff --git a/Structure/ssp/esm/1b/.DS_Store b/Structure/ssp/esm/1b/.DS_Store
diff --git a/Structure/ssp/esm/1b/esm/.DS_Store b/Structure/ssp/esm/1b/esm/.DS_Store
diff --git a/Structure/ssp/esm/msa_transormer/.DS_Store b/Structure/ssp/esm/msa_transormer/.DS_Store
diff --git a/Structure/ssp/esm/msa_transormer/esm/.DS_Store b/Structure/ssp/esm/msa_transormer/esm/.DS_Store
diff --git a/data/.DS_Store b/data/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/.DS_Store b/data/a3m_to_alphafold_pkl/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/alphafold/.DS_Store b/data/a3m_to_alphafold_pkl/alphafold/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/alphafold/common/.DS_Store b/data/a3m_to_alphafold_pkl/alphafold/common/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/alphafold/data/.DS_Store b/data/a3m_to_alphafold_pkl/alphafold/data/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/alphafold/model/.DS_Store b/data/a3m_to_alphafold_pkl/alphafold/model/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/alphafold/relax/.DS_Store b/data/a3m_to_alphafold_pkl/alphafold/relax/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/data/.DS_Store b/data/a3m_to_alphafold_pkl/data/.DS_Store
diff --git a/data/a3m_to_alphafold_pkl/data/af2_data/.DS_Store b/data/a3m_to_alphafold_pkl/data/af2_data/.DS_Store