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ci: replace Travis CI with GH Actions #60

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ci: replace Travis CI with GH Actions #60

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bad64a2
added github actions
psankhe28 Jun 25, 2024
a8de884
checking curl installation
psankhe28 Jun 25, 2024
0083614
checking http response
psankhe28 Jun 25, 2024
f645820
check for service
psankhe28 Jun 25, 2024
8474357
replaced travis ci with github actions
psankhe28 Jul 3, 2024
3b071d4
added python file for testing endpoints
psankhe28 Jul 3, 2024
beae023
removed docker service
psankhe28 Jul 3, 2024
2978f86
added api test file
psankhe28 Jul 3, 2024
be9ff74
added all endpoints with status codes
psankhe28 Jul 3, 2024
7644ba5
added helper function for common errors
psankhe28 Jul 3, 2024
a78e9c4
fixed the pytest error
psankhe28 Jul 3, 2024
4a45fec
Merge branch 'elixir-cloud-aai:dev' into github-actions
psankhe28 Jul 22, 2024
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164 changes: 164 additions & 0 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
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name: Test Drs-filer API Endpoints

on: [push, pull_request]

jobs:
test:
runs-on: ubuntu-latest

steps:
- name: Checkout code
uses: actions/checkout@v2
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- name: Build and run Docker Compose
run: docker-compose up --build -d

- name: Wait for the services to be ready
run: |
while ! curl -sSf http://localhost:8080 > /dev/null; do
echo "Waiting for the services to be ready..."
sleep 5
done

- name: Install curl (if not already available)
run: |
if ! command -v curl &> /dev/null
then
sudo apt-get update
sudo apt-get install -y curl
fi

- name: Test GET /service-info
run: |
RESPONSE=$(curl -s -o response.txt -w "%{http_code}" -X GET --header 'Accept: application/json' 'http://localhost:8080/ga4gh/drs/v1/service-info')
HTTP_STATUS=$(cat response.txt)
if [ "$HTTP_STATUS" -ne 200 ]; then
echo "Error: Received HTTP status code $HTTP_STATUS"
exit 1
fi
cat response.txt
echo $RESPONSE
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- name: Test GET /objects
run: |
RESPONSE=$(curl -X GET --header 'Accept: application/json' 'http://localhost:8080/ga4gh/drs/v1/objects')
echo $RESPONSE

- name: Test POST /objects
id: create_object
run: |
RESPONSE=$(curl -s -X POST --header 'Content-Type: application/json' --header 'Accept: application/json' -d '{
"access_methods": [
{
"access_url": {
"headers": [],
"url": "http://example.com/data"
},
"region": "us-east-1",
"type": "s3"
}
],
"aliases": [
"example_alias"
],
"checksums": [
{
"checksum": "abc123",
"type": "sha-256"
}
],
"contents": [],
"created_time": "2024-06-12T12:58:19Z",
"description": "An example object",
"mime_type": "application/json",
"name": "example_object",
"size": 1024,
"updated_time": "2024-06-12T12:58:19Z",
"version": "1.0"
}' 'http://localhost:8080/ga4gh/drs/v1/objects')
id=$(echo "$RESPONSE" | tr -d '"' | sed 's/ //g')
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echo "::set-output name=id::$id"
echo $RESPONSE

- name: Test GET /objects/{object_id}
id: access_id_obj
run: |
RESPONSE=$(curl -s -X GET --header 'Accept: application/json' "http://localhost:8080/ga4gh/drs/v1/objects/${{ steps.create_object.outputs.id }}")
access_id=$(echo "$RESPONSE" | jq -r '.access_methods[0].access_id')
echo "::set-output name=access_id::$access_id"
echo $access_id

- name: Test GET /objects/{object_id}/access/{access_id}
run: |
RESPONSE=$(curl -X GET --header 'Accept: application/json' "http://localhost:8080/ga4gh/drs/v1/objects/${{ steps.create_object.outputs.id }}/access/${{ steps.access_id_obj.outputs.access_id}}")
echo $RESPONSE

- name: Test PUT /objects/{object_id}
run: |
RESPONSE=$(curl -X PUT \
--header 'Accept: application/json' \
--header 'Content-Type: application/json' \
--data '{
"access_methods": [
{
"access_url": {
"headers": [
"string"
],
"url": "string"
},
"region": "us-east-1",
"type": "s3"
}
],
"aliases": [
"string"
],
"checksums": [
{
"checksum": "string",
"type": "sha-256"
}
],
"contents": [
{
"contents": [],
"drs_uri": [
"drs://drs.example.org/314159",
"drs://drs.example.org/213512",
"drs://drs.example.org/213516"
],
"id": "string",
"name": "string"
}
],
"created_time": "2024-06-12T06:27:29.248Z",
"description": "string",
"mime_type": "application/json",
"name": "string",
"size": 0,
"updated_time": "2024-06-12T06:27:29.248Z",
"version": "string"
}' \
"http://localhost:8080/ga4gh/drs/v1/objects/${{ steps.create_object.outputs.id }}")
echo $RESPONSE

- name: Test DELETE /objects/{object_id}/access/{access_id}
run: |
RESPONSE=$(curl -X DELETE --header 'Accept: application/json' "http://localhost:8080/ga4gh/drs/v1/objects/${{ steps.create_object.outputs.id }}/access/${{ steps.access_id_obj.outputs.access_id}}")
echo $RESPONSE

- name: Test DELETE /objects/{object_id}
run: |
RESPONSE=$(curl -X DELETE --header 'Accept: application/json' "http://localhost:8080/ga4gh/drs/v1/objects/${{ steps.create_object.outputs.id }}")
echo $RESPONSE

- name: Test POST /service-info
run: |
RESPONSE=$(curl -X POST http://localhost:8080/ga4gh/drs/v1/service-info -H 'Content-Type: application/json' -d '{"contactUrl": "mailto:[email protected]","createdAt": "2024-06-12T12:58:19Z","description": "This service provides...","documentationUrl": "https://docs.myservice.example.com","environment": "test","id": "org.ga4gh.myservice","name": "My project","organization": {"name": "My organization","url": "https://example.com"},"type": {"artifact": "beacon","group": "org.ga4gh","version": "1.0.0"},"updatedAt": "2024-06-12T12:58:19Z","version": "1.0.0"}')
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suggestion: Consider breaking down long JSON payloads

The JSON payload in this POST request is quite long and can be hard to read. Consider breaking it down into multiple lines or using a JSON file to improve readability.

echo $RESPONSE

- name: Test GET /service-info
run: |
RESPONSE=$(curl -X GET --header 'Accept: application/json' 'http://localhost:8080/ga4gh/drs/v1/service-info')
echo $RESPONSE