fix to R 3.1.0

DESCRIPTION

@@ -0,0 +1,17 @@
+Package: intervals
+Version: 0.15.0
+Date: 2014-09-19
+Type: Package
+Title: Tools for working with points and intervals
+Author: Richard Bourgon <[email protected]>
+Maintainer: Edzer Pebesma <[email protected]>
+Depends: R (>= 2.9.0), methods
+Suggests:
+Description: Tools for working with and comparing sets of points and intervals.
+License: Artistic-2.0
+LazyLoad: yes
+URL: http://github.com/edzer/intervals
+Packaged: 2013-11-03 17:10:26 UTC; hornik
+NeedsCompilation: yes
+Repository: CRAN
+Date/Publication: 2013-11-03 18:23:55

MD5

@@ -0,0 +1,62 @@
+e3b52f25c29216dab4411db63fc9924d *DESCRIPTION
+8fad5c1380be8ac95292709b667580c0 *NAMESPACE
+395419ebcf2325cd51382cf869b7ce5c *NEWS
+5d3f4dfbcb8c9119dd1562ccbc412467 *R/Intervals-class.R
+b324268152a9423e6c65c0c988d6c54b *R/as.matrix.R
+38bfefc3e9a840c8c923c89880c1587c *R/c.R
+34cd12ab4fe68a81147862e97b15949f *R/close_intervals-methods.R
+b3eb24412f49233d264cfa4b59d7e2e4 *R/closed-methods.R
+ff9d706b9f496d57e129b6900b73f897 *R/clusters.R
+bf6fd3b2e3d8a0423e0d5cc56886861b *R/distance_to_nearest-methods.R
+eab17d98c078805adf0e123cb637cc15 *R/empty-methods.R
+fc7e40041f4ae6b2796830c2fa03fd59 *R/expand-methods.R
+af2a9dcabf565023997fdd01481ebd1c *R/head-methods.R
+36b33045bde48137c282a6019157e0c9 *R/interval_complement-methods.R
+90cc9b22d5562826c992b7e8afb189d6 *R/interval_difference-methods.R
+521baba587949ec360abde100182c525 *R/interval_included-methods.R
+1564356296f5c31f7f4b8e2af3f81198 *R/interval_intersection-methods.R
+22e0554a7dd6017d28ed6af0b739a005 *R/interval_overlap-methods.R
+c4db0a892e9af14025c7140d24cbc146 *R/interval_union-methods.R
+606491d4aac135785542a9ccfc8a3070 *R/is.na-methods.R
+c0676ed4c23fb7e3ddbc2943706e449e *R/plot.Intervals_virtual.R
+c98be2c3ff6e8bb290722d3b0d7cb40f *R/reduce-methods.R
+dd2d5638db27a01280f3ba7b51499ca2 *R/show-methods.R
+9fb026e61d588212f18e5ce675e25b6d *R/size-methods.R
+f60a5d3db5f7ffdc7b2e2f89ad73aa8e *R/split.R
+1f063de2558da95b89939fe6ded3cb17 *R/t-methods.R
+269d9904ee4f9077977318a06c0ea80b *R/type-methods.R
+68f0dd826dd4eacc4f1dd5b9563ca0a6 *R/which_nearest-methods.R
+27f6ca46de01553328e15e76bebe5643 *build/vignette.rds
+92331b5a7c5d0c6c690134be22d279fd *data/sgd.rdata
+a2f1dae28510f0ca5a3cb5089741ff79 *inst/doc/intervals_overview.R
+61b77aed42f5d4a9517527dfd20dcd9f *inst/doc/intervals_overview.Rnw
+746f4bf572ae118beddaa1361890addd *inst/doc/intervals_overview.pdf
+35de4238afd3ef852acdffeaee785700 *man/Intervals-class.Rd
+0177e9e1b85eacda57458bfe8298c35c *man/Intervals_virtual-class.Rd
+e3e3202f6d824d8f23a435eb9ebf58d1 *man/Intervals_virtual_or_numeric-class.Rd
+fa157f068564f9751e7a820fd76113cc *man/as.matrix.Intervals.Rd
+fbfe10a5da6b8e08f574a14e7f6a3e5e *man/c.Intervals.Rd
+90ca50aa8682d0b5d29a7296a7ae6452 *man/close_intervals-methods.Rd
+2abf435889e72a82124c8500f4be5c98 *man/clusters-methods.Rd
+75da89fdf7d4e884ff0d8d194d6e1f01 *man/distance_to_nearest-methods.Rd
+1dba3b2837c85159bbaf2688ae0adbad *man/empty-methods.Rd
+e382cd554673c0068670a67278c6115a *man/expand-methods.Rd
+096699acb78d27aa015bfcf956f4f557 *man/interval_complement-methods.Rd
+d5e010258d8a735cf40deb9f5a46dfaf *man/interval_difference-methods.Rd
+f294dea1388f4faa935666279c852ceb *man/interval_included-methods.Rd
+5795101b91efd8d1858b2a883716d9da *man/interval_intersection-methods.Rd
+0800a00a632882b9723a3df5d80d3160 *man/interval_overlap-methods.Rd
+8c3d9577d7b5ee414115951dc669f921 *man/interval_union-methods.Rd
+e4fe3b5b457265fdfc8bf6b6ff82ae8b *man/intervals-package.Rd
+a0f85d87af5844eb046f54e67d62331a *man/plot.Intervals.Rd
+5c627704aac7e9dcaea89534d6a7a6fe *man/reduce-methods.Rd
+27dce9eb576a05a2deaa48fd10c8c4d2 *man/sgd.Rd
+c02935db7a4e097bf4316e967f41cb67 *man/size-methods.Rd
+4a9e6b81bd312461016f35fa3b3909b0 *man/split.Intervals_virtual.Rd
+32a4b517594cd57c13e31a54ce542808 *man/which_nearest-methods.Rd
+8e00c2c424c18850880d2273098bfa60 *src/Endpoint.cpp
+7a32b00c4f944861c37a65658958b93c *src/Endpoint.h
+21e3c6ce0a8cb6f07ce6e0e0cc049316 *src/plot_overlap.cpp
+07904a7e49cad3fa6b13cb957818460b *src/reduce.cpp
+5419ee07a71faefc60ec68a9dd67d451 *src/which_nearest.cpp
+477a72cf673ae334fb367f84bc7870e0 *tests/intervals_test_code.R

NAMESPACE

@@ -0,0 +1,65 @@
+######## Compiled code
+
+useDynLib( "intervals" )
+
+######## Imports
+
+# Class, method, and regular imports from the methods package are not listed
+# here, since we depend on the package.
+
+import("methods")
+
+importFrom( "utils", "head", "tail" )
+
+######## Exports
+
+export( "Intervals", "Intervals_full" )
+
+S3method( "split", "Intervals_virtual" )
+S3method( "as.matrix", "Intervals_virtual" )
+S3method( "c", "Intervals" )
+S3method( "c", "Intervals_full" )
+S3method( "plot", "Intervals" )
+S3method( "plot", "Intervals_full" )
+exportClasses(
+  "Intervals",
+  "Intervals_full",
+  "Intervals_virtual",
+  "Intervals_virtual_or_numeric"
+)
+
+exportMethods(
+  "[",
+  "[<-",
+  "as.matrix",
+  "adjust_closure",
+  "close_intervals",
+  "closed",
+  "closed<-",
+  "clusters",
+  "coerce",
+  "contract",
+  "distance_to_nearest",
+  "empty",
+  "expand",
+  "head",
+  "initialize",
+  "interval_complement",
+  "interval_difference",
+  "interval_included",
+  "interval_intersection",
+  "interval_overlap",
+  "interval_union",
+  "is.na",
+  "open_intervals",
+  "plot",
+  "reduce",
+  "show",
+  "size",
+  "split",
+  "t",
+  "tail",
+  "type",
+  "type<-",
+  "which_nearest"
+)

NEWS

@@ -0,0 +1,74 @@
+			******** VERSION 0.13.3 ********
+
+BUG FIXES
+
+  - The S3 plot() method for class Intervals was ignoring the y argument. (The
+    method for class Intervals_full did, however, use the argument properly.)
+    This has been fixed.
+
+			******** VERSION 0.13.2 ********
+
+BUG FIXES
+
+  - The initialization method for the Intervals class threw errors when empty
+    objects were created. This has been fixed.
+
+			******** VERSION 0.13.0 ********
+NEW FEATURES
+
+  - New interval_included methods, similar to interval_overlap, but requiring
+    full inclusion.
+
+			******** VERSION 0.12.3 ********
+NEW FEATURES
+
+  - S3 as.matrix methods for Intervals and Intervals_full objects.
+
+			******** VERSION 0.12.0 ********
+NEW FEATURES
+
+  - S3 plot methods for Intervals and Intervals_full objects.
+
+			******** VERSION 0.11.1 ********
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+  - The interval_overlap and distance_to_nearest methods are now just wrappers
+    for which_nearest. Because of this, the argument names for interval_overlap,
+    have been changed from 'target' and 'query' to 'from' and 'to',
+    respectively, in order to match the other two functions. Argument order is
+    the same as before, but functions which call arguments by name and use the
+    old names will now generate an (informative) error message.
+
+BUG FIXES
+
+  - The C++ code for interval_overlap correctly handles all varieties of
+    endpoint closure, but does not handle cases like (0,2) vs. (1,3) over
+    Z. (These intervals do not overlap, even though the right endpoint of the
+    first interval is nominally after the left endpoint of the second interval.)
+    This should have been handled by the R wrapper -- by applying
+    close_intervals before passing on to compiled code -- but this step had
+    previously been omitted. This is now fixed.
+
+NEW FEATURES
+
+  - The interval_overlap, which_nearest, and distance_to_nearest methods now all
+    accept a numeric vector in both the 'from' and 'to' arguments.
+
+IMPROVEMENTS
+
+  - The distance_to_nearest methods were previously based on old code using
+    approxfun(). They now work of the same algorithm used for interval_overlap
+    and which_nearest. This algorithm simultaneously generates all three types
+    of information: identity of overlaps and nearest neighbors, as well as
+    distance to nearest neighbors.
+
+			******** VERSION 0.11.0 ********
+
+NEW FEATURES
+
+  - Adding a NEWS file!
+
+  - Added which_nearest methods, as a complement to distance_to_nearest. The C++
+    code previously used for interval_overlap calculations was augmented to
+    provide this functionality.