Process completed with exit code 1.

--- re-building ‘excluderanges.Rmd’ using rmarkdown

processing vignette 'excluderanges.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

No such keg: /opt/homebrew/Cellar/[email protected]

package or namespace load failed for 'GenomeInfoDb' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

package or namespace load failed for 'GenomeInfoDb' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

Build process failed

Process completed with exit code 1.

package or namespace load failed for 'GenomeInfoDb' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

No files were found with the provided path: check. No artifacts will be uploaded.

No files were found with the provided path: check. No artifacts will be uploaded.

pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

harfbuzz 10.1.0 is already installed and up-to-date. To reinstall 10.1.0, run: brew reinstall harfbuzz

fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi

macOS's Gatekeeper has been disabled for this Cask