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v0.7.0

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@dmnfarrell dmnfarrell released this 22 Jan 19:55
  • changed calling step to now run mpileup and call separately. now merge called vcfs at end, allows re-running pipeline much easier
  • 16S species check plugin
  • added calling_method option to allow use of old calling method
  • changed proximity filter to number, now default unless value is 0
  • check for duplicates tool allows dups to be marked
  • move fastq file option
  • snp tables should now display better with vertical column header
  • removed rtd docs - moved to wiki