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get np2 compatible #150

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Jun 19, 2024
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4 changes: 2 additions & 2 deletions .environmentLinux.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ dependencies:
- gcc_linux-64
- curl
- zlib
- python 3.8
- python = 3.9
- pip
- numpy
- nose
- pytest
10 changes: 6 additions & 4 deletions .github/workflows/build.yml
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
name: Test
on: pull_request
on:
pull_request:
push:

jobs:
testLinux:
Expand All @@ -14,11 +16,11 @@ jobs:
with:
activate-environment: foo
environment-file: .environmentLinux.yaml
python-version: 3.8
python-version: 3.9
auto-activate-base: false
- run: |
pip install .
nosetests -sv
pytest pyBigWigTest/test.py

test-builds:
runs-on: ubuntu-latest
Expand All @@ -30,7 +32,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.7'
python-version: '3.9'
- name: Install build prerequisites
run: |
python -m pip install --upgrade build numpy
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/pypi.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.7'
python-version: '3.9'
- name: Install build prerequisites
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
run: |
Expand Down
2 changes: 1 addition & 1 deletion pyBigWig.h
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
#include <structmember.h>
#include "bigWig.h"

#define pyBigWigVersion "0.3.22"
#define pyBigWigVersion "0.3.23"

typedef struct {
PyObject_HEAD
Expand Down
12 changes: 6 additions & 6 deletions pyproject.toml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[build-system]
build-backend = "setuptools.build_meta"
requires = ["oldest-supported-numpy", "setuptools", "setuptools-scm"]
requires = ["numpy >= 2.0.0", "setuptools", "setuptools-scm"]

[project]
authors = [{name = "Devon P. Ryan", email = "[email protected]"}]
Expand All @@ -11,7 +11,7 @@ classifiers = [
"Programming Language :: C",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: Implementation :: CPython",
"Operating System :: POSIX",
"Operating System :: Unix",
Expand All @@ -20,9 +20,9 @@ classifiers = [
description = "A package for accessing bigWig files using libBigWig"
keywords = ["bioinformatics", "bigWig", "bigBed"]
name = "pyBigWig"
version = "0.3.22"
version = "0.3.23"
readme = "README.md"
requires-python = ">=3.7"
requires-python = ">=3.9"

[project.license]
text = "MIT"
Expand All @@ -41,9 +41,9 @@ packages = ["pyBigWigTest"]
# Enable version inference from scm
[tool.setuptools_scm]

# Target only minimum CPython version 3.7 on linux for wheel build
# Target only minimum CPython version 3.9 on linux for wheel build
[tool.cibuildwheel]
skip = "pp* cp36-* *-manylinux_i686 *_ppc64le *_s390x *-musllinux_x86_64 *-musllinux_i686"
skip = "pp* cp38-* *-manylinux_i686 *_ppc64le *_s390x *-musllinux_x86_64 *-musllinux_i686"

[tool.cibuildwheel.linux]
manylinux-x86_64-image = "manylinux2014"
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