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1. janelia-cellmap/mesh-n-bone janelia-cellmap/mesh-n-bone Public

   Generate multiresolution neuroglancer meshes and skeletons from segmentation volumes (zarr, N5, precomputed), parallelized with Dask.

   Python 13 3

2. janelia-cellmap/cellmap-flow janelia-cellmap/cellmap-flow Public

   Interactive, on-the-fly deep-learning inference and visualization for large-scale 3D microscopy data in Neuroglancer.

   Python 9 3

3. janelia-cellmap/cellmap-analyze janelia-cellmap/cellmap-analyze Public

   Dask-powered tools for processing and analyzing terabyte-scale 3D segmentations: connected components, contact sites, skeletonization, measurements and more.

   Python 4 1

4. JaneliaSciComp/chunkmirage JaneliaSciComp/chunkmirage Public

   Serve virtual chunked arrays (Zarr, N5, precomputed) over HTTP: each chunk computed on request by a pipeline you can edit live.

   Python 3

5. janelia-cellmap/dacapo janelia-cellmap/dacapo Public

   A framework for easy application of established machine learning techniques on large, multi-dimensional images.

   Python 61 13

6. tourguide tourguide Public

   Agent-driven 3D microscopy visual workspace — Neuroglancer + tables + plots, driven over an MCP workspace API.

   TypeScript 1 1