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rebuild readme
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david-barnett committed May 15, 2023
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20 changes: 10 additions & 10 deletions README.md
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Expand Up @@ -17,7 +17,7 @@ date)](https://img.shields.io/docker/v/barnettdavid/microviz-rocker-verse?color=
status](https://david-barnett.r-universe.dev/badges/microViz)](https://david-barnett.r-universe.dev/ui#package:microViz)
[![JOSS
article](https://joss.theoj.org/papers/4547b492f224a26d96938ada81fee3fa/status.svg)](https://joss.theoj.org/papers/4547b492f224a26d96938ada81fee3fa)
[![Citations](https://img.shields.io/badge/Citations-~35-blueviolet)](https://scholar.google.com/scholar?oi=bibs&hl=en&cites=5439940108464463894)
[![Citations](https://img.shields.io/badge/Citations-~37-blueviolet)](https://scholar.google.com/scholar?oi=bibs&hl=en&cites=5439940108464463894)
[![Zenodo
DOI](https://zenodo.org/badge/307119750.svg)](https://zenodo.org/badge/latestdoi/307119750)
<!-- badges: end -->
Expand Down Expand Up @@ -331,8 +331,8 @@ aitchison_perm <- aitchison_dists %>%
n_processes = 1, n_perms = 99, # you should use at least 999!
variables = "bmi_group"
)
#> 2023-05-10 16:46:01.721377 - Starting PERMANOVA with 99 perms with 1 processes
#> 2023-05-10 16:46:01.802465 - Finished PERMANOVA
#> 2023-05-15 21:22:34.548391 - Starting PERMANOVA with 99 perms with 1 processes
#> 2023-05-15 21:22:34.605894 - Finished PERMANOVA

# view the permanova results
perm_get(aitchison_perm) %>% as.data.frame()
Expand All @@ -357,8 +357,8 @@ your permanova directly using the `ord_plot` function with constraints
perm2 <- aitchison_dists %>%
dist_permanova(variables = c("weight", "african", "sex"), seed = 321)
#> Dropping samples with missings: 2
#> 2023-05-10 16:46:01.826384 - Starting PERMANOVA with 999 perms with 1 processes
#> 2023-05-10 16:46:03.691074 - Finished PERMANOVA
#> 2023-05-15 21:22:34.623176 - Starting PERMANOVA with 999 perms with 1 processes
#> 2023-05-15 21:22:36.280034 - Finished PERMANOVA
```

We’ll visualise the effect of nationality and bodyweight on sample
Expand Down Expand Up @@ -451,12 +451,12 @@ and by participating in this project you agree to abide by its terms.
``` r
sessionInfo()
#> R version 4.3.0 (2023-04-21)
#> Platform: x86_64-apple-darwin20 (64-bit)
#> Platform: aarch64-apple-darwin20 (64-bit)
#> Running under: macOS Ventura 13.3.1
#>
#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
#> BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
#>
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
Expand Down Expand Up @@ -486,10 +486,10 @@ sessionInfo()
#> [34] shiny_1.7.4 digest_0.6.31 selectr_0.4-2
#> [37] colorspace_2.1-0 S4Vectors_0.38.1 ps_1.7.5
#> [40] pkgload_1.3.2 seriation_1.4.2 vegan_2.6-4
#> [43] labeling_0.4.2 fansi_1.0.4 httr_1.4.6
#> [43] labeling_0.4.2 fansi_1.0.4 httr_1.4.5
#> [46] mgcv_1.8-42 compiler_4.3.0 remotes_2.4.2
#> [49] doParallel_1.0.17 withr_2.5.0 viridis_0.6.3
#> [52] pkgbuild_1.4.0 highr_0.10 MASS_7.3-58.4
#> [52] pkgbuild_1.4.0 highr_0.10 MASS_7.3-60
#> [55] sessioninfo_1.2.2 rjson_0.2.21 biomformat_1.28.0
#> [58] permute_0.9-7 tools_4.3.0 ape_5.7-1
#> [61] httpuv_1.6.9 glue_1.6.2 callr_3.7.3
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