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@datajoint

DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 174 86

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 10 133

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 35

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 9 46

Repositories

Showing 10 of 91 repositories
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 174 LGPL-2.1 86 131 2 Updated Mar 14, 2025
  • datajoint-specs Public

    DataJoint Specifications

    datajoint/datajoint-specs’s past year of commit activity
    0 1 0 0 Updated Mar 13, 2025
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 1 5 1 0 Updated Mar 1, 2025
  • CaImAn Public Forked from flatironinstitute/CaImAn

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    datajoint/CaImAn’s past year of commit activity
    Python 0 GPL-2.0 376 0 1 Updated Feb 27, 2025
  • element-deeplabcut Public

    DataJoint Element for behavioral analysis with DeepLabCut

    datajoint/element-deeplabcut’s past year of commit activity
    Jupyter Notebook 13 MIT 38 8 (1 issue needs help) 0 Updated Feb 25, 2025
  • element-facemap Public

    DataJoint Element for behavioral analysis with Facemap

    datajoint/element-facemap’s past year of commit activity
    Jupyter Notebook 3 MIT 13 0 0 Updated Feb 19, 2025
  • element-event Public

    DataJoint Element for event-based behavior experiments

    datajoint/element-event’s past year of commit activity
    Python 1 MIT 18 3 0 Updated Feb 19, 2025
  • .github Public

    Organizational default configs for @datajoint repos

    datajoint/.github’s past year of commit activity
    0 MIT 4 0 0 Updated Feb 17, 2025
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 35 26 (2 issues need help) 0 Updated Feb 14, 2025
  • element-zstack Public

    DataJoint Element for volumetric data analysis using Cellpose

    datajoint/element-zstack’s past year of commit activity
    Python 0 MIT 8 1 0 Updated Feb 14, 2025