PM4: Remove double condition for inframe variants

Remove duplicated condition made on protein length ratio calculation
damianosmel · Jun 4, 2022 · ccf7f1c · ccf7f1c
1 parent 69b2bd0
commit ccf7f1c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/genotoscope/variants/AssignPM4.py b/genotoscope/variants/AssignPM4.py
@@ -375,7 +375,7 @@ def assess_PM4_inframe_indel(self, transcripts_info, variant_info, var_coding_se
 			else:
 				obs_prot_len = self.calculate_observed_protein_length(variant_info)
 			ref_prot_len = len(transcript.protein_sequence)
-			prot_change_ratio = abs(obs_prot_len - ref_prot_len) / ref_prot_len > 0.1
+			prot_change_ratio = abs(obs_prot_len - ref_prot_len) / ref_prot_len
 			self.logger.debug("Protein change ratio: {}".format(prot_change_ratio))
 
 			if transcript.protein_sequence and prot_change_ratio > 0.1: