update uwsgi config in app.ini

Author: Maiykol

Diff for: Dockerfile

@@ -13,8 +13,8 @@ RUN pip3 --no-cache-dir install -r requirements.txt
 # the path.
 ENV MARIADB_PLUGIN_DIR /usr/lib/mariadb/plugin
 
-#EXPOSE 5000
-#CMD ["python3", "server.py"]
+# EXPOSE 5000
+# CMD ["python3", "server.py"]
 
 #run the command to start uWSGI
 CMD ["uwsgi", "app.ini"]

Diff for: app.ini

@@ -1,7 +1,7 @@
 [uwsgi]
 wsgi-file = server.py
 callable = connex_app
-socket = :5000
+http = :5000
 processes = 4
 threads = 2
 master = true

Diff for: config.py

@@ -17,6 +17,9 @@
 app.config['SQLALCHEMY_ECHO'] = False
 app.config['SQLALCHEMY_DATABASE_URI'] = os.getenv("SPONGE_DB_URI")
 app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = False
+app.config['DEBUG '] = True
+app.config['TESTING '] = True
+
 
 @app.after_request
 def add_header(response):

Diff for: externalInformation.py

@@ -14,7 +14,6 @@ def getAutocomplete(searchString):
         data = models.Gene.query.with_entities(models.Gene.ensg_number, models.Gene.gene_symbol) \
             .filter(models.Gene.ensg_number.ilike(searchString + "%")) \
             .all()
-        print(data)
         if len(data) > 0:
             return models.GeneSchemaShort(many=True).dump(data).data
         else:

Diff for: geneInteraction.py

@@ -809,6 +809,6 @@ def get_distinc_ceRNA_sets(disease_name):
         #return models.DistinctGeneSetSchema(many=True).dump(results).data
     #else:
         #abort(404, "No data found with input parameter")
-    return print("Null")
+    return
 
 get_distinc_ceRNA_sets(disease_name="kidney clear")

Diff for: server.py

@@ -17,7 +17,7 @@
 # create a URL route in our application for "/"
 @connex_app.route("/")
 def home():
-    return None
+    return "SPONGEdb API"
 
 if __name__ == "__main__":
     connex_app.run()

Diff for: survivalAnalysis.py

@@ -89,7 +89,6 @@ def get_survival_rate(disease_name, ensg_number = None, gene_symbol = None, samp
 
         if (len(patient) > 0):
             sample_IDs = [i.patient_information_ID for i in patient]
-            print(sample_IDs)
             # save all needed queries to get correct results
             queries.append(models.SurvivalRate.patient_information_ID.in_(sample_IDs))
         else: