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.dockerignore
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venv
evaluation
converters
cmake-*
.idea
*.zip
.git
# ignore data except the two files needed
data/**
!data/dbSNP
!data/BIOGRID
!data/eqtl_mapping
# .DS_Store files
*.DS_Store
# Build directory
build
docs/
# Binary directories
**/bin
!/ext/uWebSockets/uSockets/lsquic/bin
# INI files for unit tests
/test/unit/init/*
# Result files for model test
test/model/res/*
# Eclipse files
.cproject
.project
.pydevproject
/.settings/*
# Prerequisites
*.d
# Compiled object files
*.slo
*.lo
*.o
*.obj
# Precompiled headers
*.gch
*.pch
# Compiled dynamic libraries
*.so
*.dylib
*.dll
# Fortran module files
*.mod
*.smod
# Compiled static libraries
*.lai
*.la
*.a
*.lib
# Executables
*.exe
*.out
*.app
# Boost libraries
/ext/boost_1_71_0/.INSTALLED
/ext/boost_1_71_0/b2
/ext/boost_1_71_0/bin.v2/
/ext/boost_1_71_0/bootstrap.log
/ext/boost_1_71_0/project-config.jam
/ext/boost_1_71_0/user-config.jam
/ext/boost_1_71_0/project-config.jam*
/ext/boost_1_71_0/stage/
/ext/boost_1_71_0/tools/build/src/engine/b2
/ext/boost_1_71_0/tools/build/src/engine/bjam
# Unzipped BIOGRID network.
# /data/BIOGRID/BIOGRID-ORGANISM-Homo_sapiens-3.5.182.tab2.txt
# /data/BIOGRID/__MACOSX/
#
# # unzipped GRNs
# /data/GRN/*.csv
#
# #dbSNP
# /data/dbSNP/no_pseudogenes/snps_restruc_full.csv
# /data/dbSNP/no_pseudogenes/snps_cleaned_part1.csv
# /data/dbSNP/no_pseudogenes/snps_cleaned_part2.csv
#
# /data/dbSNP/inc_pseudogenes/snps_restruc_full_inc_pseudo.csv.zip
# /data/dbSNP/inc_pseudogenes/snps_restruc_full_inc_pseudo.csv
# /data/dbSNP/inc_pseudogenes/snps_cleaned_part1.csv
# /data/dbSNP/inc_pseudogenes/snps_cleaned_part2.csv
# /data/dbSNP/inc_pseudogenes/snps_cleaned_part3.csv
#
# #input_module
# /data/PositionBasedInputModule/gene_balanced_tree/*.csv
# /data/PositionBasedInputModule/snp_balanced_tree/*.csv
# /data/PositionBasedInputModule/snp_hashmaps/*.csv
#cmake
/cmake-build-*
/.idea/
**/CMakeCache.txt
#load
# /data/LOAD/
# /data/CAD_control/*
# /data/HT_control/*
# /data/T2D_control/*
# /data/BD_*
#ext
# /ext/plink/*
# !/ext/plink/plink-1.07-x86_64.zip
/venv/
/ext/boost_1_71_0/tools/build/src/engine/b2
/ext/boost_1_71_0/tools/build/src/engine/bjam
/ext/uWebSockets/uSockets/*.o
.Rhistory
.INSTALLED
.RES_EXTRACTED
docker/data
# ignore test data
test/e2e