Scripts: Updating the SEMS Modules based generic build script

Added some explanation, added the generation of a "modules" file,
which can be used to reload all modules without rerunning configure.
Changed the default compiler to gcc/4.8.4 because it works well with
the default CUDA Cuda 7.5.18.

sampleScripts/Sandia-SEMS/configure-all

@@ -1,5 +1,14 @@
 #!/bin/bash
 
+
+# This script is a generic build script for Trilinos using the SEMS provided modules at Sandia
+# It assumes you have the SEMS modules files as well as the Kokkos subcategory enabled
+# Assuming basic SEMS Module usage has been set up you can add the Kokkos modules through
+# source $SEMS_MODULE_ROOT/utils/sems-modules-init.sh kokkos
+# The script also assumes BLAS and LAPACK are available in the system paths.
+# A 'modules' file will be created which can be used to reload the same modules as used during configuration. 
+
+# Choose options below for configurations. 
 rm -f CMakeCache.txt;
 rm -rf CMakeFiles
 echo ""
@@ -31,10 +40,10 @@ COMPLEX=ON
 #This is meant for Sandia SEMS module system and similar setups.
 TPL_PATH=/projects/install/rhel6-x86_64/sems/tpl
 
-#Options: gcc/4.7.2 gcc/4.8.4 gcc/4.9.2 gcc/5.1.0 intel/14.0.4 intel/15.0.5 clang/3.5.2 clang/3.6.1
-COMPILER_SUFFIX=gcc/4.7.2
-#Options: cuda/6.5.14 cuda/7.0.28
-CUDA_SUFFIX=cuda/7.0.28
+#Options: gcc/4.7.2 gcc/4.8.4 gcc/4.9.2 gcc/5.1.0 intel/14.0.4 intel/15.0.2 clang/3.5.2 clang/3.6.1
+COMPILER_SUFFIX=gcc/4.8.4
+#Options: cuda/6.5.14 cuda/7.0.28 cuda/7.5.18
+CUDA_SUFFIX=cuda/7.5.18
 #Options: openmpi/1.6.5 openmpi/1.8.7
 MPI_SUFFIX=openmpi/1.8.7
 
@@ -45,8 +54,7 @@ BOOST_PATH=${TPL_PATH}/${BOOST_SUFFIX}/${COMPILER_SUFFIX}/base
 
 #SuperLU is not correctly installed in the sems modules so use your own
 SUPERLU_SUFFIX=superlu/4.3
-SUPERLU_PATH=${HOME}/libs/${SUPERLU_SUFFIX}
-#SUPERLU_PATH=${TPL_PATH}/${SUPERLU_SUFFIX}/${COMPILER_SUFFIX}/base
+SUPERLU_PATH=${TPL_PATH}/${SUPERLU_SUFFIX}/${COMPILER_SUFFIX}/base
 
 #Using HDF5 from sems
 HDF5_SUFFIX=hdf5/1.8.12
@@ -65,18 +73,34 @@ ZLIB_PATH=${TPL_PATH}/${ZLIB_SUFFIX}/${COMPILER_SUFFIX}/base
 
 module purge 
 module load cmake/2.8.12
-if [ "${CUDA}" == 'ON' ]; then
+if [ "${CUDA}" == "ON" ]; then
   module load ${CUDA_SUFFIX}
   module load ${COMPILER_SUFFIX}/${MPI_SUFFIX}/${CUDA_SUFFIX}
   export OMPI_CXX=${TRILINOS_PATH}/packages/kokkos/config/nvcc_wrapper
 else
-  module load ${COMPILER_SUFFIX}/${MPI_SUFFIX}
+  module load ${COMPILER_SUFFIX}/${MPI_SUFFIX}/${CUDA_SUFFIX}
+  module load ${CUDA_SUFFIX}
 fi
 module load ${BOOST_SUFFIX}/${COMPILER_SUFFIX}/base
 module load ${HDF5_SUFFIX}/${COMPILER_SUFFIX}/${MPI_SUFFIX}
 module load ${NETCDF_SUFFIX}/${COMPILER_SUFFIX}/parallel
 module load ${ZLIB_SUFFIX}/${COMPILER_SUFFIX}/base
 
+echo "module purge" > modules
+echo "module load cmake/2.8.12" >> modules
+if [ "${CUDA}" == "ON" ]; then
+  echo "module load ${CUDA_SUFFIX}" >> modules
+  echo "module load ${COMPILER_SUFFIX}/${MPI_SUFFIX}/${CUDA_SUFFIX}" >> modules
+  echo "export OMPI_CXX=${TRILINOS_PATH}/packages/kokkos/config/nvcc_wrapper" >> modules
+else
+  echo "module load ${COMPILER_SUFFIX}/${MPI_SUFFIX}/${CUDA_SUFFIX}" >> modules
+  echo "module load ${CUDA_SUFFIX}" >> modules
+fi
+echo "module load ${BOOST_SUFFIX}/${COMPILER_SUFFIX}/base" >> modules
+echo "module load ${HDF5_SUFFIX}/${COMPILER_SUFFIX}/${MPI_SUFFIX}" >> modules
+echo "module load ${NETCDF_SUFFIX}/${COMPILER_SUFFIX}/parallel" >> modules
+echo "module load ${ZLIB_SUFFIX}/${COMPILER_SUFFIX}/base" >> modules
+
 # CMAKE Command structured
 #
 # Basic Options for backends (Enable OpenMP etc.)
@@ -117,7 +141,7 @@ cmake \
 -D TPL_ENABLE_MPI=ON \
   -D MPI_EXEC_POST_NUMPROCS_FLAGS:STRING="-bind-to;socket;-map-by;socket" \
 -D TPL_ENABLE_BinUtils=OFF \
--D TPL_ENABLE_SuperLU=ON \
+-D TPL_ENABLE_SuperLU=OFF \
   -D TPL_SuperLU_LIBRARIES:STRING="${SUPERLU_PATH}/lib/libsuperlu.a" \
   -D TPL_SuperLU_INCLUDE_DIRS:STRING="${SUPERLU_PATH}/include" \
 -D TPL_ENABLE_BLAS=ON \