Support for curation coverage level in TES artifacts - #599
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Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## master #599 +/- ##
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- Coverage 22.15% 22.07% -0.08%
Complexity 1687 1687
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Files 285 289 +4
Lines 24901 24989 +88
Branches 3965 3980 +15
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Hits 5517 5517
- Misses 18454 18542 +88
Partials 930 930 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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Chris0296
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Aug 6, 2026
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Approved after discussion.
sliver007
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August 6, 2026 16:13
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Add CRMI curation coverage support and improve TES package generation
Description
Highlights
Adds support for reading curation coverage data from workbook sheets and populating the crmi-curationCoverageLevel extension on Condition and Additional Context Groupers.
Refactors grouper entry models into standalone classes for improved organization and maintainability.
Improves matching and naming by normalizing whitespace in grouper titles and condition codes.
Refactors common extension creation and other shared helper logic.
Updates the generated manifest to:
Enhances generated workbook output by producing separate sheets for Condition Groupers and Additional Context Groupers.
Adds utility methods for date parsing, text normalization, and curation coverage resolution.
Includes minor cleanup, typo fixes, and validation improvements throughout the generator.
Github Issue:
I've read the contribution guidelines
Code compiles without errors
Tests are created / updated
Documentation is created / updated
By creating this PR you acknowledge that your contribution will be licensed under Apache 2.0