chimerax-copick

A collaborative cryo-ET annotation plugin for ChimeraX.

Requirements

• ChimeraX
• ChimeraX-OME-Zarr
• ArtiaX
• copick

Data Spec

Uses the copick data model and backend to store and retrieve data.

Example project

An example project can be obtained from Zenodo.

To test with the example project:

1. Download chimerax-copick from the releases page
2. Download and unpack the example project
3. Add the location to the root sample_project directory to the config (json-)file (overlay_root variable in copick_config_filesystem.json)
4. Install in ChimeraX using toolshed install /PATH/TO/ChimeraX_copick-0.1.1-py3-none-any.whl
5. Restart ChimeraX
6. Run copick start /PATH/TO/copick_config_filesystem.json in the ChimeraX command line.