feat(multiome): Update the upload_local_datafile_to_dataset.ipynb to use a manifest.

[Bento007]

Reason for Change

• Now that the manifest endpoint is used to upload datasets from the submission bucket, the notebook upload_local_datafile_to_dataset must be updated to use the new work flow. Now local files are uploaded to s3, and the resulting s3_uri will populate the manifest. The manifest submission endpoint will be called with the newly uploaded files and ingestion will start.

Changes

• update the upload_local_datafile to return an s3_uri
• Use the local file name i the s3 object key.
• update upload_local_datafile_to_dataset to use the manifest endpoint and build the manifest.

Testing

Notes for Reviewer

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.29%. Comparing base (50c98d3) to head (d12e3bb).
Report is 1 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1288      +/-   ##
==========================================
- Coverage   89.33%   89.29%   -0.05%     
==========================================
  Files          21       21              
  Lines        2373     2373              
==========================================
- Hits         2120     2119       -1     
- Misses        253      254       +1     

Components	Coverage Δ
cellxgene_schema_cli	89.93% <ø> (-0.06%)	⬇️
migration_assistant	91.26% <ø> (ø)
schema_bump_dry_run_genes	79.74% <ø> (ø)
schema_bump_dry_run_ontologies	99.53% <ø> (ø)

🚀 New features to boost your workflow:

• ❄ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.