chore: remove long filename PDFs from docs/reference

cafferychen777 · Dec 31, 2024 · d3ca3c8 · d3ca3c8
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diff --git a/...ong_observed_species_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf b/...ong_observed_species_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf
diff --git a/.../alpha_boxplot_long_observed_species_subject_subject_time_time_group_group_strata_sex.pdf b/.../alpha_boxplot_long_observed_species_subject_subject_time_time_group_group_strata_sex.pdf
diff --git a/...boxplot_long_shannon_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf b/...boxplot_long_shannon_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf
diff --git a/...reference/alpha_boxplot_long_shannon_subject_subject_time_time_group_group_strata_sex.pdf b/...reference/alpha_boxplot_long_shannon_subject_subject_time_time_group_group_strata_sex.pdf
diff --git a/docs/reference/alpha_boxplot_single_observed_species_time_time_group_group_strata_sex.pdf b/docs/reference/alpha_boxplot_single_observed_species_time_time_group_group_strata_sex.pdf
diff --git a/docs/reference/alpha_boxplot_single_shannon_time_time_group_group_strata_sex.pdf b/docs/reference/alpha_boxplot_single_shannon_time_time_group_group_strata_sex.pdf
diff --git a/...ct_subject_time_time_change_base_1_change_func_log fold change_group_group_strata_sex.pdf b/...ct_subject_time_time_change_base_1_change_func_log fold change_group_group_strata_sex.pdf
diff --git a/...ct_subject_time_time_change_base_1_change_func_log fold change_group_group_strata_sex.pdf b/...ct_subject_time_time_change_base_1_change_func_log fold change_group_group_strata_sex.pdf
diff --git a/...ong_observed_species_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf b/...ong_observed_species_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf
diff --git a/..._spaghettiplot_long_observed_species_subject_subject_time_time_group_group_strata_sex.pdf b/..._spaghettiplot_long_observed_species_subject_subject_time_time_group_group_strata_sex.pdf
diff --git a/...ttiplot_long_shannon_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf b/...ttiplot_long_shannon_subject_antiexposedall_time_month_num_group_delivery_strata_diet.pdf
diff --git a/...nce/alpha_spaghettiplot_long_shannon_subject_subject_time_time_group_group_strata_sex.pdf b/...nce/alpha_spaghettiplot_long_shannon_subject_subject_time_time_group_group_strata_sex.pdf
diff --git a/...ce/beta_change_boxplot_BC_subject_subject.id_time_month_num_t0_level_0_group_delivery.pdf b/...ce/beta_change_boxplot_BC_subject_subject.id_time_month_num_t0_level_0_group_delivery.pdf
diff --git a/...ta_change_boxplot_Jaccard_subject_subject.id_time_month_num_t0_level_0_group_delivery.pdf b/...ta_change_boxplot_Jaccard_subject_subject.id_time_month_num_t0_level_0_group_delivery.pdf
diff --git a/...rence/beta_change_boxplot_pair_BC_subject_subject_time_time_change_base_1_group_group.pdf b/...rence/beta_change_boxplot_pair_BC_subject_subject_time_time_change_base_1_group_group.pdf
diff --git a/.../beta_change_boxplot_pair_Jaccard_subject_subject_time_time_change_base_1_group_group.pdf b/.../beta_change_boxplot_pair_Jaccard_subject_subject_time_time_change_base_1_group_group.pdf
diff --git a/...ference/beta_change_spaghettiplot_BC_subject_subject.id_time_month_num_group_delivery.pdf b/...ference/beta_change_spaghettiplot_BC_subject_subject.id_time_month_num_group_delivery.pdf
diff --git a/...ce/beta_change_spaghettiplot_Jaccard_subject_subject.id_time_month_num_group_delivery.pdf b/...ce/beta_change_spaghettiplot_Jaccard_subject_subject.id_time_month_num_group_delivery.pdf
diff --git a/...ce/beta_ordination_long_subject_subject.id_time_month_num_dist.name_BC_group_delivery.pdf b/...ce/beta_ordination_long_subject_subject.id_time_month_num_dist.name_BC_group_delivery.pdf
diff --git a/...ta_ordination_long_subject_subject.id_time_month_num_dist.name_Jaccard_group_delivery.pdf b/...ta_ordination_long_subject_subject.id_time_month_num_dist.name_Jaccard_group_delivery.pdf
diff --git a/docs/reference/beta_ordination_pair_subject_subject_time_time_dist.name_BC_group_group.pdf b/docs/reference/beta_ordination_pair_subject_subject_time_time_dist.name_BC_group_group.pdf
diff --git a/...eference/beta_ordination_pair_subject_subject_time_time_dist.name_Jaccard_group_group.pdf b/...eference/beta_ordination_pair_subject_subject_time_time_dist.name_Jaccard_group_group.pdf
diff --git a/docs/reference/beta_ordination_single_subject__time_time_dist.name_BC_group_group.pdf b/docs/reference/beta_ordination_single_subject__time_time_dist.name_BC_group_group.pdf
diff --git a/docs/reference/beta_ordination_single_subject__time_time_dist.name_Jaccard_group_group.pdf b/docs/reference/beta_ordination_single_subject__time_time_dist.name_Jaccard_group_group.pdf
diff --git a/...ure_level_Family_feature_number_20_group_sample_body_site_strata_subject_race_avergae.pdf b/...ure_level_Family_feature_number_20_group_sample_body_site_strata_subject_race_avergae.pdf
diff --git a/...ure_level_Family_feature_number_20_group_sample_body_site_strata_subject_race_avergae.pdf b/...ure_level_Family_feature_number_20_group_sample_body_site_strata_subject_race_avergae.pdf
diff --git a/...bject_subject_time_time_feature_level_Family_feature_number_20_group_group_strata_sex.pdf b/...bject_subject_time_time_feature_level_Family_feature_number_20_group_group_strata_sex.pdf
diff --git a/...bject_time_time_feature_level_Family_feature_number_20_group_group_strata_sex_avergae.pdf b/...bject_time_time_feature_level_Family_feature_number_20_group_group_strata_sex_avergae.pdf
diff --git a/...ubject_subject_time_time_feature_level_Genus_feature_number_20_group_group_strata_sex.pdf b/...ubject_subject_time_time_feature_level_Genus_feature_number_20_group_group_strata_sex.pdf
diff --git a/...ubject_time_time_feature_level_Genus_feature_number_20_group_group_strata_sex_avergae.pdf b/...ubject_time_time_feature_level_Genus_feature_number_20_group_group_strata_sex_avergae.pdf
diff --git a/...bject_subject_time_time_feature_level_Phylum_feature_number_20_group_group_strata_sex.pdf b/...bject_subject_time_time_feature_level_Phylum_feature_number_20_group_group_strata_sex.pdf
diff --git a/...bject_time_time_feature_level_Phylum_feature_number_20_group_group_strata_sex_avergae.pdf b/...bject_time_time_feature_level_Phylum_feature_number_20_group_group_strata_sex_avergae.pdf
diff --git a/...barplot_single_time_month_feature_level_Family_feature_number_20_group_antiexposedall.pdf b/...barplot_single_time_month_feature_level_Family_feature_number_20_group_antiexposedall.pdf
diff --git a/...single_time_month_feature_level_Family_feature_number_20_group_antiexposedall_avergae.pdf b/...single_time_month_feature_level_Family_feature_number_20_group_antiexposedall_avergae.pdf
diff --git a/...ime_month_feature_level_Family_feature_number_20_group_antiexposedall_strata_delivery.pdf b/...ime_month_feature_level_Family_feature_number_20_group_antiexposedall_strata_delivery.pdf
diff --git a/...h_feature_level_Family_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf b/...h_feature_level_Family_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf
diff --git a/..._barplot_single_time_month_feature_level_Genus_feature_number_20_group_antiexposedall.pdf b/..._barplot_single_time_month_feature_level_Genus_feature_number_20_group_antiexposedall.pdf
diff --git a/..._single_time_month_feature_level_Genus_feature_number_20_group_antiexposedall_avergae.pdf b/..._single_time_month_feature_level_Genus_feature_number_20_group_antiexposedall_avergae.pdf
diff --git a/...time_month_feature_level_Genus_feature_number_20_group_antiexposedall_strata_delivery.pdf b/...time_month_feature_level_Genus_feature_number_20_group_antiexposedall_strata_delivery.pdf
diff --git a/...th_feature_level_Genus_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf b/...th_feature_level_Genus_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf
diff --git a/...barplot_single_time_month_feature_level_Phylum_feature_number_20_group_antiexposedall.pdf b/...barplot_single_time_month_feature_level_Phylum_feature_number_20_group_antiexposedall.pdf
diff --git a/...single_time_month_feature_level_Phylum_feature_number_20_group_antiexposedall_avergae.pdf b/...single_time_month_feature_level_Phylum_feature_number_20_group_antiexposedall_avergae.pdf
diff --git a/...ime_month_feature_level_Phylum_feature_number_20_group_antiexposedall_strata_delivery.pdf b/...ime_month_feature_level_Phylum_feature_number_20_group_antiexposedall_strata_delivery.pdf
diff --git a/...h_feature_level_Phylum_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf b/...h_feature_level_Phylum_feature_number_20_group_antiexposedall_strata_delivery_avergae.pdf
diff --git a/..._prev_filter_0.05_abund_filter_0.01_group_sample_body_site_strata_subject_race_Family.pdf b/..._prev_filter_0.05_abund_filter_0.01_group_sample_body_site_strata_subject_race_Family.pdf
diff --git a/...m_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Family.pdf b/...m_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Family.pdf
diff --git a/...rm_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Genus.pdf b/...rm_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Genus.pdf
diff --git a/...m_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Phylum.pdf b/...m_sqrt_prev_filter_0.05_abund_filter_0.01_group_antiexposedall_strata_delivery_Phylum.pdf
diff --git a/...hange_base_1_feature_level_Family_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf b/...hange_base_1_feature_level_Family_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf
diff --git a/...change_base_1_feature_level_Genus_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf b/...change_base_1_feature_level_Genus_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf
diff --git a/...hange_base_1_feature_level_Phylum_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf b/...hange_base_1_feature_level_Phylum_prev_filter_0_abund_filter_0_group_group_strata_sex.pdf
diff --git a/...p_sample_body_site_strata_subject_race_taxa_Family_prev_filter_0.01_abund_filter_0.01.pdf b/...p_sample_body_site_strata_subject_race_taxa_Family_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...e_time_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...e_time_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/..._level_Family_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf b/..._level_Family_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf
diff --git a/...e_level_Genus_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf b/...e_level_Genus_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf
diff --git a/..._level_Phylum_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf b/..._level_Phylum_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery.pdf
diff --git a/...body_site_strata_subject_race_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf b/...body_site_strata_subject_race_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...body_site_strata_subject_race_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf b/...body_site_strata_subject_race_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...e_time_group_group_strata_sex_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf b/...e_time_group_group_strata_sex_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...me_time_group_group_strata_sex_feature_level_Genus_prev_filter_0.01_abund_filter_0.01.pdf b/...me_time_group_group_strata_sex_feature_level_Genus_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...e_time_group_group_strata_sex_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01.pdf b/...e_time_group_group_strata_sex_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...e_time_group_group_strata_sex_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf b/...e_time_group_group_strata_sex_feature_level_Family_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...me_time_group_group_strata_sex_feature_level_Genus_prev_filter_0.01_abund_filter_0.01.pdf b/...me_time_group_group_strata_sex_feature_level_Genus_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...e_time_group_group_strata_sex_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01.pdf b/...e_time_group_group_strata_sex_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01.pdf
diff --git a/...tiexposedall_strata_delivery_feature_level_Family_prev_filter_0.01_abund_filter_1e-04.pdf b/...tiexposedall_strata_delivery_feature_level_Family_prev_filter_0.01_abund_filter_1e-04.pdf
diff --git a/...ntiexposedall_strata_delivery_feature_level_Genus_prev_filter_0.01_abund_filter_1e-04.pdf b/...ntiexposedall_strata_delivery_feature_level_Genus_prev_filter_0.01_abund_filter_1e-04.pdf
diff --git a/...tiexposedall_strata_delivery_feature_level_Phylum_prev_filter_0.01_abund_filter_1e-04.pdf b/...tiexposedall_strata_delivery_feature_level_Phylum_prev_filter_0.01_abund_filter_1e-04.pdf
diff --git a/..._prev_filter_0.01_abund_filter_0.01_group_sample_body_site_strata_subject_race_Family.pdf b/..._prev_filter_0.01_abund_filter_0.01_group_sample_body_site_strata_subject_race_Family.pdf
diff --git a/...amily_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Family.pdf b/...amily_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Family.pdf
diff --git a/..._Genus_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Genus.pdf b/..._Genus_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Genus.pdf
diff --git a/...hylum_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Phylum.pdf b/...hylum_transform_sqrt_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex_Phylum.pdf
diff --git a/...m_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Family.pdf b/...m_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Family.pdf
diff --git a/...rm_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Genus.pdf b/...rm_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Genus.pdf
diff --git a/...m_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Phylum.pdf b/...m_sqrt_prev_filter_0.01_abund_filter_0.01_group_antiexposedall_strata_delivery_Phylum.pdf
diff --git a/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Family_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/..._base_1_feature_level_Genus_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf b/...base_1_feature_level_Phylum_prev_filter_0.01_abund_filter_0.01_group_group_strata_sex.pdf
diff --git a/...rev_filter_0.01_abund_filter_0.01_base_size_16_theme_choice_bw_pdf_wid_11_pdf_hei_8.5.pdf b/...rev_filter_0.01_abund_filter_0.01_base_size_16_theme_choice_bw_pdf_wid_11_pdf_hei_8.5.pdf
diff --git a/...rev_filter_0.01_abund_filter_0.01_base_size_16_theme_choice_bw_pdf_wid_11_pdf_hei_8.5.pdf b/...rev_filter_0.01_abund_filter_0.01_base_size_16_theme_choice_bw_pdf_wid_11_pdf_hei_8.5.pdf