reorganize #includes

[yaito3014]

reorganizing #includes using IWYU except for headers within Rustify.hpp

• Note

  • ::tolower and ::toupper are not guaranteed to be declared in <cctype> header, so there are two options:

    • option1: include <ctype.h> instead
    • option2: rewite those to like [](auto c) { return std::toupper(c); }

    This PR took option1 because the purpose of this is just organizing #includes.

[ken-matsui]

Thanks!