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add coverage tracks for CNVs (percent callable, deletion burden, and duplication burden) #1358

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add coverage tracks for CNVs (percent callable, deletion burden, and duplication burden) #1358

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elissa-alarmani
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@elissa-alarmani elissa-alarmani commented Dec 13, 2023 •
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Currently, this PR correctly implements the percent callable track for the CNV dataset and queries all 3 tracks (percent callable, deletion burden, and duplication burden track).

TODO:

  • Decide on the best ways to visualize the 3 tracks
  • Front-end visualization of deletion burden track (create components such as ./GenePage/CopyNumberVariantsGeneDeletionBurdenTrack.tsx and ./RegionPage/CopyNumberVariantsRegionDeletionBurdenTrack.tsx
  • Front-end visualization of deletion burden track (create components such as ./GenePage/CopyNumberVariantsGeneDuplicationBurdenTrack.tsx and ./RegionPage/CopyNumberVariantsRegionDuplicationBurdenTrack.tsx
  • Testing of the deletion and duplication burden tracks.

@elissa-alarmani elissa-alarmani changed the title create discrete barplot for percent callable track add coverage tracks for CNVs (percent callable, deletion burden, and duplication burden) Dec 13, 2023
@elissa-alarmani elissa-alarmani self-assigned this Dec 13, 2023
@elissa-alarmani elissa-alarmani linked an issue Dec 13, 2023 that may be closed by this pull request
Add gnomAD v4 CNVs #1133
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@elissa-alarmani
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Useful testing region and genes for the percent callable track:
Region: 1-50375975-50768099
Genes: OSBPL9 and CLSPN

@rileyhgrant
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Closing as stale

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Add gnomAD v4 CNVs
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@elissa-alarmani @rileyhgrant