better error messages and --sample-exprs
v0.1.0
- allow accessing INFO via
variant.INFO
as well asINFO
- better error message on missing gnotate file
- add --sample-expr to
slivar expr
sub-command to allow applying an expression to each sample:
--sample-expr "hi_quality:sample.DP > 10 && sample.GQ > 20"
- expose samples in javascript in
$S
object, e.g.$S["sampleABC"].DP > 10 && $S["sampleXYZ"].DP > 10
binaries and annotation files
There are 2 binaries for this release. Both are 64bit linux binaries.
slivar_static
is a completely static binary. you can download it and use it without any other software. This is the recommended binary. You can wget, chmod +x and start analyzing.slivar_shared
depends on a libhts.so. it has the advantage of allowing access to files on s3 or https if that is needed.
users can also use slivar via docker at brentp/slivar:v0.1.0
the gnotation files for fast annotation remain unchanged.
Users can create their own gnotation files with slivar make-gnotate
, but we provide: