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fb4a959
Changes pulled from PR in branch.
wearysebas Mar 17, 2026
f684326
Fixed issue with the topology_cross_section image and rebased onto ne…
wearysebas Mar 20, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -87,3 +87,4 @@ coverage/
/BOUT++-v*.tar.xz
/CMakeCache.txt
/CMakeFiles/cmake.check_cache
.vscode/
2 changes: 1 addition & 1 deletion externalpackages/boutdata
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Submodule boutdata updated 61 files
+13 −10 .github/workflows/formatting.yml
+32 −16 .github/workflows/test.yml
+6 −44 pyproject.toml
+7 −5 src/boutdata/__init__.py
+26 −0 src/boutdata/cbdtoeqdsk.py
+58 −38 src/boutdata/collect.py
+53 −71 src/boutdata/data.py
+153 −0 src/boutdata/gen_surface.py
+46 −172 src/boutdata/griddata.py
+56 −0 src/boutdata/input.py
+115 −0 src/boutdata/mayavi2.py
+7 −7 src/boutdata/mms.py
+5 −3 src/boutdata/pol_slice.py
+39 −45 src/boutdata/restart.py
+93 −0 src/boutdata/settings.py
+2 −2 src/boutdata/squashoutput.py
+4 −4 src/boutdata/tests/make_test_data.py
+1 −1 src/boutdata/tests/test_collect.py
+0 −84 src/boutupgrader/__init__.py
+0 −230 src/boutupgrader/bout_3to4.py
+0 −240 src/boutupgrader/bout_v5_factory_upgrader.py
+0 −139 src/boutupgrader/bout_v5_format_upgrader.py
+0 −159 src/boutupgrader/bout_v5_header_upgrader.py
+0 −354 src/boutupgrader/bout_v5_input_file_upgrader.py
+0 −352 src/boutupgrader/bout_v5_macro_upgrader.py
+0 −430 src/boutupgrader/bout_v5_physics_model_upgrader.py
+0 −205 src/boutupgrader/bout_v5_xzinterpolation_upgrader.py
+0 −218 src/boutupgrader/bout_v6_coordinates_upgrader.py
+0 −22 src/boutupgrader/bout_v6_input_file_upgrader.py
+0 −78 src/boutupgrader/common.py
+0 −145 src/boutupgrader/hermes_collisions_input_file_upgrader.py
+18 −2 src/boututils/View3D.py
+3 −2 src/boututils/__init__.py
+290 −0 src/boututils/analyse_equil_2.py
+1 −1 src/boututils/anim.py
+58 −0 src/boututils/ask.py
+3 −1 src/boututils/boutarray.py
+1 −1 src/boututils/boutgrid.py
+1 −1 src/boututils/boutwarnings.py
+12 −8 src/boututils/check_scaling.py
+14 −0 src/boututils/closest_line.py
+234 −0 src/boututils/crosslines.py
+14 −26 src/boututils/datafile.py
+421 −0 src/boututils/efit_analyzer.py
+40 −0 src/boututils/fft_deriv.py
+27 −0 src/boututils/file_import.py
+297 −0 src/boututils/geqdsk.py
+16 −0 src/boututils/idl_tabulate.py
+73 −0 src/boututils/local_min_max.py
+2 −1 src/boututils/mode_structure.py
+163 −0 src/boututils/options.py
+1 −1 src/boututils/plotdata.py
+144 −0 src/boututils/plotpolslice.py
+64 −0 src/boututils/radial_grid.py
+98 −0 src/boututils/read_geqdsk.py
+34 −21 src/boututils/run_wrapper.py
+8 −8 src/boututils/showdata.py
+3 −3 src/boututils/spectrogram.py
+4 −15 src/boututils/surface_average.py
+3 −1 src/boututils/volume_integral.py
+82 −0 src/boututils/watch.py
2 changes: 1 addition & 1 deletion externalpackages/fmt
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Submodule fmt updated 190 files
2 changes: 1 addition & 1 deletion externalpackages/googletest
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Submodule googletest updated 89 files
+5 −17 BUILD.bazel
+2 −2 CMakeLists.txt
+17 −31 MODULE.bazel
+12 −4 README.md
+15 −14 WORKSPACE
+62 −104 ci/linux-presubmit.sh
+5 −21 ci/macos-presubmit.sh
+14 −38 ci/windows-presubmit.bat
+7 −7 docs/_layouts/default.html
+67 −103 docs/advanced.md
+13 −0 docs/faq.md
+1 −1 docs/gmock_cheat_sheet.md
+26 −60 docs/gmock_cook_book.md
+2 −2 docs/primer.md
+8 −8 docs/quickstart-bazel.md
+3 −3 docs/quickstart-cmake.md
+3 −4 docs/reference/actions.md
+2 −9 docs/reference/assertions.md
+5 −45 docs/reference/matchers.md
+1 −98 docs/reference/testing.md
+4 −32 fake_fuchsia_sdk.bzl
+39 −104 googlemock/include/gmock/gmock-actions.h
+2 −2 googlemock/include/gmock/gmock-cardinalities.h
+165 −462 googlemock/include/gmock/gmock-matchers.h
+5 −4 googlemock/include/gmock/gmock-more-actions.h
+1 −1 googlemock/include/gmock/gmock-more-matchers.h
+9 −9 googlemock/include/gmock/gmock-nice-strict.h
+11 −11 googlemock/include/gmock/gmock-spec-builders.h
+15 −9 googlemock/include/gmock/internal/gmock-internal-utils.h
+3 −3 googlemock/include/gmock/internal/gmock-port.h
+2 −2 googlemock/src/gmock-internal-utils.cc
+17 −17 googlemock/src/gmock-spec-builders.cc
+0 −1 googlemock/test/BUILD.bazel
+39 −46 googlemock/test/gmock-actions_test.cc
+6 −6 googlemock/test/gmock-cardinalities_test.cc
+3 −10 googlemock/test/gmock-function-mocker_test.cc
+2 −2 googlemock/test/gmock-internal-utils_test.cc
+25 −206 googlemock/test/gmock-matchers-arithmetic_test.cc
+16 −174 googlemock/test/gmock-matchers-comparisons_test.cc
+22 −320 googlemock/test/gmock-matchers-containers_test.cc
+25 −84 googlemock/test/gmock-matchers-misc_test.cc
+29 −58 googlemock/test/gmock-more-actions_test.cc
+9 −8 googlemock/test/gmock-spec-builders_test.cc
+3 −3 googlemock/test/gmock_link_test.h
+4 −4 googlemock/test/gmock_output_test_golden.txt
+3 −0 googletest/CMakeLists.txt
+6 −6 googletest/README.md
+8 −15 googletest/cmake/internal_utils.cmake
+1 −8 googletest/include/gtest/gtest-assertion-result.h
+3 −3 googletest/include/gtest/gtest-death-test.h
+28 −78 googletest/include/gtest/gtest-matchers.h
+39 −95 googletest/include/gtest/gtest-param-test.h
+71 −116 googletest/include/gtest/gtest-printers.h
+2 −2 googletest/include/gtest/gtest-spi.h
+8 −9 googletest/include/gtest/gtest-test-part.h
+71 −67 googletest/include/gtest/gtest-typed-test.h
+29 −36 googletest/include/gtest/gtest.h
+11 −11 googletest/include/gtest/internal/gtest-death-test-internal.h
+1 −1 googletest/include/gtest/internal/gtest-filepath.h
+66 −62 googletest/include/gtest/internal/gtest-internal.h
+34 −71 googletest/include/gtest/internal/gtest-param-util.h
+0 −2 googletest/include/gtest/internal/gtest-port-arch.h
+232 −87 googletest/include/gtest/internal/gtest-port.h
+2 −2 googletest/include/gtest/internal/gtest-string.h
+0 −4 googletest/src/gtest-internal-inl.h
+11 −12 googletest/src/gtest-port.cc
+10 −10 googletest/src/gtest-printers.cc
+3 −5 googletest/src/gtest-test-part.cc
+67 −228 googletest/src/gtest.cc
+17 −52 googletest/test/BUILD.bazel
+0 −1 googletest/test/googletest-color-test.py
+1 −1 googletest/test/googletest-death-test-test.cc
+0 −38 googletest/test/googletest-fail-if-no-test-linked-test-with-disabled-test_.cc
+0 −38 googletest/test/googletest-fail-if-no-test-linked-test-with-enabled-test_.cc
+0 −165 googletest/test/googletest-fail-if-no-test-linked-test.py
+0 −91 googletest/test/googletest-fail-if-no-test-selected-test.py
+0 −19 googletest/test/googletest-filter-unittest.py
+16 −95 googletest/test/googletest-json-output-unittest.py
+1 −1 googletest/test/googletest-output-test-golden-lin.txt
+2 −72 googletest/test/googletest-param-test-test.cc
+8 −10 googletest/test/googletest-port-test.cc
+20 −98 googletest/test/googletest-printers-test.cc
+2 −2 googletest/test/googletest-setuptestsuite-test_.cc
+1 −1 googletest/test/googletest-test-part-test.cc
+2 −2 googletest/test/gtest_stress_test.cc
+19 −68 googletest/test/gtest_unittest.cc
+26 −67 googletest/test/gtest_xml_output_unittest.py
+1 −21 googletest/test/gtest_xml_output_unittest_.cc
+6 −22 googletest_deps.bzl
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