Discussions

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  Adding nf-schema to pipeline

  marchoeppner started Mar 12, 2025 in Ideas

  

  

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  Remove or discourage conda usage

  marchoeppner started Mar 4, 2025 in General

  

  

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  ITS Database options

  marchoeppner started Jan 14, 2025 in General

  

  

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  Non overlapping reads support

  gregdenay started Nov 22, 2024 in General

  

  

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  MultiQC

  gregdenay started Dec 6, 2024 in General

  

  

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  remove_chimera is ignored?

  gregdenay started Nov 26, 2024 in General · Closed

  

  

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  Quarto - Insert size visualization

  marchoeppner started Nov 11, 2024 in General

  

  

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  input declaration in sample_report process

  gregdenay started Nov 5, 2024 in General

  

  

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  PR and issues templates

  gregdenay started Sep 20, 2024 in General

  

  

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  Benchmarking

  gregdenay started Aug 1, 2024 in General

  

  

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  nf-configs repo

  gregdenay started Sep 18, 2024 in General

  

  

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  JSON summary

  marchoeppner started Sep 17, 2024 in General

  

  

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  Cutadapt --discard-untrimmed

  marchoeppner started Jul 16, 2024 in General · Closed

  

  

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  Workflow schema

  marchoeppner started Sep 9, 2024 in General

  

  

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  Removing groovy lint

  marchoeppner started Sep 3, 2024 in General · Closed

  

  

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  Workflow for ONT Data

  marchoeppner started Jul 15, 2024 in General

  

  

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  Contact email

  marchoeppner started Aug 12, 2024 in General · Closed

  

  

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  📣

  1.0.0.alpha

  gregdenay announced Aug 7, 2024 in Announcements · Closed

  

  

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  Test prerelease

  gregdenay started Aug 7, 2024 in General

  

  

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  Genbank database

  marchoeppner started Jul 8, 2024 in General · Closed

  

  

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  Cutadapt --revcomp not working as expected

  marchoeppner started Jul 9, 2024 in General · Closed

  

  

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  Primer benchmark

  marchoeppner started Jul 10, 2024 in General · Closed

  

  

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  New BLAST version

  gregdenay started Jul 25, 2024 in General

  

  

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  Orienting long reads

  marchoeppner started Jul 15, 2024 in General

  

  

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  Automatic cleanup - yay or nay?

  marchoeppner started Jul 11, 2024 in General

  

  

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