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Garagnani clocks #136

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4730aaa
Fix Yasamin's name in contributors
chancenlaw Jan 25, 2025
b62ce74
Merge branch 'bio-learn:master' into aginginitiative@H
chancenlaw Feb 19, 2025
1cf321e
Add Garagnani to model definitions
alexiszxcv Mar 4, 2025
60690a0
Add files via upload
alexiszxcv Mar 4, 2025
124babf
Fix Garagnani
chancenlaw Apr 29, 2025
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2 changes: 2 additions & 0 deletions biolearn/data/Garagnani.csv
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@@ -0,0 +1,2 @@
"CpG","CoefficientTraining"
"cg16867657",1
12 changes: 12 additions & 0 deletions biolearn/model.py
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Expand Up @@ -493,6 +493,18 @@ def anti_trafo(x, adult_age=20):
"transform": lambda sum: sum + 55.808884324,
},
},
"Garagnani": {
"year": 2012,
"species": "Human",
"tissue": "Blood",
"source": "https://pubmed.ncbi.nlm.nih.gov/23061750/",
"output": "Age (Years)",
"model": {
"type": "LinearMethylationModel",
"file": "Garagnani.csv",
"transform": lambda sum: sum,
},
},
}


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11 changes: 11 additions & 0 deletions biolearn/test/data/expected_model_outputs/Garagnani.csv
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@@ -0,0 +1,11 @@
,Predicted
GSM1009660,0.5040356
GSM1009661,0.4410885
GSM1009662,0.7710733
GSM1009663,0.3821406
GSM1009664,0.4491455
GSM1009665,0.3927967
GSM1009666,0.3865714
GSM1009667,0.3591537
GSM1009668,0.3943706
GSM1009669,0.349683
2 changes: 1 addition & 1 deletion doc/changes/names.rst
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Expand Up @@ -8,7 +8,7 @@
.. _Mehrnoosh Emamifar: https://www.linkedin.com/in/mehrnoosh-emamifar/
.. _Chancen Law: https://www.linkedin.com/in/chancenlaw/
.. _Nureldin Mohamed: https://www.linkedin.com/in/nureldin-m-19738625b/
.. _Yasamin Joda: https://www.linkedin.com/in/yasamin-jodat/
.. _Yasamin Jodat: https://www.linkedin.com/in/yasamin-jodat/
.. _Aneesh Mazumder: https://www.linkedin.com/in/aneesh-mazumder/

.. _AI4Life Institute: https://www.ai4lifeinstitute.com/