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Weidner clocks #135

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4730aaa
Fix Yasamin's name in contributors
chancenlaw Jan 25, 2025
b62ce74
Merge branch 'bio-learn:master' into aginginitiative@H
chancenlaw Feb 19, 2025
ce75e68
Upload Weidner CSV
alexiszxcv Mar 4, 2025
48b4bd3
Update model definition with Weidner
alexiszxcv Mar 4, 2025
dc4a47f
Add expected_model_outputs and fixed doi link
chancenlaw Apr 29, 2025
84c54fb
Add Weidner.csv to data folder
chancenlaw Apr 29, 2025
643fd7f
Fix Weidner csv file
chancenlaw May 6, 2025
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4 changes: 4 additions & 0 deletions biolearn/data/Weidner.csv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
CpGmarker,CoefficientTraining
cg02228185, -64.57
cg25809905, -42.57
cg17861230, 75.15
12 changes: 12 additions & 0 deletions biolearn/model.py
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Expand Up @@ -477,6 +477,18 @@ def anti_trafo(x, adult_age=20):
"type": "LinearMethylationModel",
"file": "DepressionBarbu.csv",
},
},
"Weidner": {
"year": 2014,
"species": "Human",
"tissue": "Blood",
"source": "https://doi.org/10.1186/gb-2014-15-2-r24",
"output": "Age (Years)",
"model": {
"type": "LinearMethylationModel",
"file": "Weidner.csv",
"transform": lambda sum: sum + 111.83,
},
},
"TranscriptomicPredictionModel": {
"year": 2015,
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11 changes: 11 additions & 0 deletions biolearn/test/data/expected_model_outputs/Weidner.csv
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@@ -0,0 +1,11 @@
id,Predicted
GSM1009660,113.9543409
GSM1009661,101.4319503
GSM1009662,42.64289973
GSM1009663,114.278756
GSM1009664,98.43019015
GSM1009665,39.58947133
GSM1009666,119.0713668
GSM1009667,97.00022002
GSM1009668,45.09482757
GSM1009669,116.0692581
2 changes: 1 addition & 1 deletion doc/changes/names.rst
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Expand Up @@ -8,7 +8,7 @@
.. _Mehrnoosh Emamifar: https://www.linkedin.com/in/mehrnoosh-emamifar/
.. _Chancen Law: https://www.linkedin.com/in/chancenlaw/
.. _Nureldin Mohamed: https://www.linkedin.com/in/nureldin-m-19738625b/
.. _Yasamin Joda: https://www.linkedin.com/in/yasamin-jodat/
.. _Yasamin Jodat: https://www.linkedin.com/in/yasamin-jodat/
.. _Aneesh Mazumder: https://www.linkedin.com/in/aneesh-mazumder/

.. _AI4Life Institute: https://www.ai4lifeinstitute.com/