Deployed 9c16708 with MkDocs version: 1.6.0

index.html

@@ -388,5 +388,5 @@ <h2 id="citing-arete">Citing ARETE <a name="citing"></a></h2>
 
 <!--
 MkDocs version : 1.6.0
-Build Date UTC : 2024-07-23 13:04:07.882721+00:00
+Build Date UTC : 2024-07-25 16:05:46.545001+00:00
 -->

params/index.html

@@ -303,6 +303,12 @@ <h2 id="annotation">Annotation</h2>
 <td><code>string</code></td>
 <td>mobsuite,rgi,cazy,vfdb,iceberg,bacmet</td>
 </tr>
+<tr>
+<td><code>upset_plot_columns</code></td>
+<td>Columns to use for making Upset plots of genome features</td>
+<td><code>string</code></td>
+<td></td>
+</tr>
 </tbody>
 </table>
 <h2 id="phylogenomics">Phylogenomics</h2>
@@ -389,13 +395,13 @@ <h2 id="poppunk">PopPUNK</h2>
 <td><code>core_similarity</code></td>
 <td>Similarity threshold for core genomes</td>
 <td><code>number</code></td>
-<td>99.99</td>
+<td>99.9</td>
 </tr>
 <tr>
 <td><code>accessory_similarity</code></td>
 <td>Similarity threshold for accessory genes</td>
 <td><code>number</code></td>
-<td>99</td>
+<td>99.0</td>
 </tr>
 </tbody>
 </table>
@@ -662,19 +668,19 @@ <h2 id="max-job-request-options">Max job request options</h2>
 <td><code>max_cpus</code></td>
 <td>Maximum number of CPUs that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the CPU requirement for each process. Should be an integer e.g. <code>--max_cpus 1</code></small></details></td>
 <td><code>integer</code></td>
-<td>16</td>
+<td>72</td>
 </tr>
 <tr>
 <td><code>max_memory</code></td>
 <td>Maximum amount of memory that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the memory requirement for each process. Should be a string in the format integer-unit e.g. <code>--max_memory '8.GB'</code></small></details></td>
 <td><code>string</code></td>
-<td>128.GB</td>
+<td>125.GB</td>
 </tr>
 <tr>
 <td><code>max_time</code></td>
 <td>Maximum amount of time that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the time requirement for each process. Should be a string in the format integer-unit e.g. <code>--max_time '2.h'</code></small></details></td>
 <td><code>string</code></td>
-<td>240.h</td>
+<td>168.h</td>
 </tr>
 </tbody>
 </table>