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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 109 9

  2. LongStitch LongStitch Public

    🪡Correct and scaffold assemblies using long reads

    Makefile 55 8

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 6

  4. btllib btllib Public

    📚Bioinformatics Technology Lab common code library

    C++ 25 6

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 70 10

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

Repositories

Showing 10 of 121 repositories
  • ntRoot Public

    🌳 Human ancestry inference from genomic data

    bcgsc/ntRoot’s past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated Oct 2, 2025
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    bcgsc/ntEdit’s past year of commit activity
    C++ 70 GPL-3.0 10 0 1 Updated Oct 2, 2025
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 7 Updated Oct 1, 2025
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 2 Updated Sep 26, 2025
  • pori_graphkb_client Public

    Front-end web client for the GraphKB project

    bcgsc/pori_graphkb_client’s past year of commit activity
    TypeScript 9 GPL-3.0 1 14 1 Updated Sep 25, 2025
  • Canadian_Biogenome_Project Public

    This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies

    bcgsc/Canadian_Biogenome_Project’s past year of commit activity
    Nextflow 3 1 1 1 Updated Sep 25, 2025
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 4 Updated Sep 24, 2025
  • Stash Public

    This repository contains the implementation for the Stash data structure

    bcgsc/Stash’s past year of commit activity
    C++ 3 GPL-3.0 2 0 0 Updated Sep 22, 2025
  • pori Public

    Platform for Oncogenomic Reporting and Interpretation (PORI)

    bcgsc/pori’s past year of commit activity
    Shell 35 GPL-3.0 8 8 1 Updated Sep 17, 2025
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 2 3 4 2 Updated Sep 17, 2025
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