hicstuff

A lightweight library that generates and handles Hi-C contact maps in either CSV or instaGRAAL format.

Installation

   pip3 install hicstuff

Usage

Contact map generation

    yahcp -1 reads_forward.fastq -2 reads_reverse.fastq -f genome.fa [-s size] [-o output_directory] [-e enzyme] [-q quality_min] [--duplicates] [--clean-up]

See yahcp for more information.

Contact map visualization

    vizmap -h

Library

See the documentation on reathedocs.