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ATGU

Analytic and Translational Genetics Unit

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  1. ukbb_pan_ancestry ukbb_pan_ancestry Public

    Analyses conducting GWAS across the UKBB diverse superpopulations

    Python 48 23

  2. hgdp_tgp hgdp_tgp Public

    Jupyter Notebook 37 5

  3. GWASpy GWASpy Public

    GWAS QC, PCA, haplotype phasing, genotype imputation

    Python 17 5

  4. gnomad_nc_constraint gnomad_nc_constraint Public

    Python 8 3

  5. CHARR CHARR Public

    Contamination from Homozygous Alternate Reference Reads

    Python 8 2

  6. pca_projection pca_projection Public

    R 6 3

Repositories

Showing 10 of 18 repositories
  • GWASpy Public

    GWAS QC, PCA, haplotype phasing, genotype imputation

    atgu/GWASpy’s past year of commit activity
    Python 17 MIT 5 0 0 Updated Jan 31, 2025
  • neurogap-hypoxia Public

    Code for the NeuroGAP hypoxia adaptation project

    atgu/neurogap-hypoxia’s past year of commit activity
    0 0 0 0 Updated Jan 27, 2025
  • ALLSPICER Public
    atgu/ALLSPICER’s past year of commit activity
    R 1 0 0 0 Updated Oct 17, 2024
  • bge_analysis Public
    atgu/bge_analysis’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Oct 16, 2024
  • ukbb_pan_ancestry Public

    Analyses conducting GWAS across the UKBB diverse superpopulations

    atgu/ukbb_pan_ancestry’s past year of commit activity
    Python 48 MIT 23 14 27 Updated Oct 4, 2024
  • hgdp_tgp Public
    atgu/hgdp_tgp’s past year of commit activity
    Jupyter Notebook 37 MIT 5 3 0 Updated Sep 25, 2024
  • gnomaf Public
    atgu/gnomaf’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 31, 2024
  • hb_pipelines Public
    atgu/hb_pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Jul 25, 2024
  • aou_gwas Public
    atgu/aou_gwas’s past year of commit activity
    Python 5 0 1 0 Updated May 30, 2024
  • gnomad_nc_constraint Public
    atgu/gnomad_nc_constraint’s past year of commit activity
    Python 8 3 2 0 Updated Dec 28, 2023
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