adding global report ds code back in

Author: aineniamh

civet/input_parsing/report_arg_parsing.py

@@ -84,7 +84,7 @@ def qc_report_content(config):
 
 #then at some point we need to update the treefile with these display names using jclusterfunk
 
-def parse_global_report_options(report_title,report_content,report_preset,report_column, anonymise,date_column, background_date_column,date_format,location_column, config):
+def parse_global_report_options(report_title,report_content,report_preset,global_snipit,report_column, anonymise,date_column, background_date_column,date_format,location_column, config):
     """
     parses the report group arguments 
     --report-content (Default 1,2,3)
@@ -108,6 +108,8 @@ def parse_global_report_options(report_title,report_content,report_preset,report
     global_report_functions.parse_date_args(date_column, background_date_column, date_format, config)
     global_report_functions.parse_location(location_column, config)
 
+    misc.add_arg_to_config(KEY_GLOBAL_SNIPIT,global_snipit,config)
+
     return name_output
 
 def parse_tree_options(tree_annotations,max_tree_size, config):