GitHub - anders-biostat/sco24: lecture "Mathematics of Single-cell Omics", summer term 2024

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Name	Name	Last commit message	Last commit date
Latest commit simon-anders added two videos Jul 15, 2024 4d33738 · Jul 15, 2024 History 54 Commits
.github/workflows	.github/workflows	Create static.yml	May 18, 2024
_site	_site	added two videos	Jul 15, 2024
data	data	data	May 22, 2024
images	images	homework, videos etc	Jun 24, 2024
old	old	smoothing	May 19, 2024
.gitignore	.gitignore	added missing images	May 19, 2024
UMAP_pedestrian.ipynb	UMAP_pedestrian.ipynb	edited UMAP ped	Jun 24, 2024
_quarto.yml	_quarto.yml	add file	May 18, 2024
announcement.html	announcement.html	re-added announcement file	May 18, 2024
biology_primer.qmd	biology_primer.qmd	initial commit	May 6, 2024
cca.R	cca.R	homework integration	Jun 26, 2024
cca.html	cca.html	commited missing files	Jul 9, 2024
cell_cycle.qmd	cell_cycle.qmd	added cell cycle	May 22, 2024
explore_scvi_result.qmd	explore_scvi_result.qmd	commited missing files	Jul 9, 2024
gamma_poisson.qmd	gamma_poisson.qmd	cpyedt	Jun 26, 2024
glm_pca.ipynb	glm_pca.ipynb	commited missing files	Jul 9, 2024
graph_diffusion.qmd	graph_diffusion.qmd	vs	Jun 10, 2024
homework_integration.qmd	homework_integration.qmd	homework integration	Jun 26, 2024
homework_smoothing.qmd	homework_smoothing.qmd	homework, videos etc	Jun 24, 2024
index.qmd	index.qmd	added two videos	Jul 15, 2024
laplacian_eigenmap.qmd	laplacian_eigenmap.qmd	laplacian eigenmaps	Jun 10, 2024
louvain.py	louvain.py	added remainder of material	May 18, 2024
overview_hts.qmd	overview_hts.qmd	initial commit	May 6, 2024
pca.qmd	pca.qmd	minor	May 18, 2024
ped_ifnagrko.R	ped_ifnagrko.R	some older test code	Jun 5, 2024
pedestrian.qmd	pedestrian.qmd	added remainder of material	May 18, 2024
principal_curves.qmd	principal_curves.qmd	added missing PCA	May 21, 2024
pseudotime_1.R	pseudotime_1.R	added images, data etc	May 19, 2024
seurat.qmd	seurat.qmd	added remainder of material	May 18, 2024
smooth_comp.R	smooth_comp.R	some older test code	Jun 5, 2024
smoothing.qmd	smoothing.qmd	smoothing	May 19, 2024
splines_1.R	splines_1.R	added images, data etc	May 19, 2024
styles.css	styles.css	finished smoothing	May 19, 2024
trajectory.qmd	trajectory.qmd	trajectory	May 21, 2024
tsne_umap_math.qmd	tsne_umap_math.qmd	added UMAP/t-SNE	Jun 18, 2024
umap_vs_tsne.qmd	umap_vs_tsne.qmd	fixed link	Jun 18, 2024