Changelog

All notable changes to this project will be documented in this file.

[1.0.1] - 2024-08-27

Missing Overall ROC curve and SHAP Radar plot in the PDF report.
The report generation script had the wrong prefix, which prevented the PNG files from being included in the PDF report.

This is a WDL (Workflow Description Language) based workflow designed to be executed on a variety of compute platforms such as Terra.bio.

This release includes the following components of the workflow:

Preprocessing: Z-score standardization and optional dimensionality reduction using PCA, UMAP, t-SNE, KPCA, and PLS.
Classification: Machine learning models including KNN, RF, NN, SVM, XGB, PLSDA, and VAE with comprehensive evaluation metrics.
SHAP Summary: Calculation of SHAP values for variable importance and ROC curve plotting.
Combined Report: Aggregation of all output plots into a single .pdf report.

[1.0.0] - 2024-08-23

Release Notes

This is a WDL (Workflow Description Language) based workflow designed to be executed on a variety of compute platforms such as Terra.bio.

This release includes the following components of the workflow:

Preprocessing: Z-score standardization and optional dimensionality reduction using PCA, UMAP, t-SNE, KPCA, and PLS.

Classification: Machine learning models including KNN, RF, NN, SVM, XGB, PLSDA, and VAE with comprehensive evaluation metrics.

SHAP Summary: Calculation of SHAP values for variable importance and ROC curve plotting.

Combined Report: Aggregation of all output plots into a single .pdf report.