Merge pull request BD2KGenomics#282 from BD2KGenomics/issues/281-upda…

…te-cutadapt Update CutAdapt to 1.18
amanpruthi · Oct 17, 2018 · d0ba497 · d0ba497
2 parents 344078e + cbc4b82
commit d0ba497
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/cutadapt/Dockerfile b/cutadapt/Dockerfile
@@ -7,7 +7,7 @@ RUN apt-get update && apt-get install -y \
         build-essential \
         python-pip
 
-RUN pip install cutadapt
+RUN pip install cutadapt==1.18
 
 # Boilerplate
 RUN mkdir /opt/cutadapt

diff --git a/cutadapt/Makefile b/cutadapt/Makefile
@@ -3,7 +3,7 @@ runtime_fullpath = $(realpath runtime)
 build_tool = runtime-container.DONE
 git_commit ?= $(shell git log --pretty=oneline -n 1 -- ../cutadapt | cut -f1 -d " ")
 name = quay.io/ucsc_cgl/cutadapt
-tag = 1.9--${git_commit}
+tag = 1.18--${git_commit}
 
 build:
 	docker build -t ${name}:${tag} .

diff --git a/cutadapt/test.py b/cutadapt/test.py
@@ -9,7 +9,7 @@ class TestCutadapt(unittest.TestCase):
 
     def test_docker_call(self):
         out, err = check_docker_output(tool='quay.io/ucsc_cgl/cutadapt')
-        self.assertTrue('cutadapt version 1.9' in out)
+        self.assertTrue('cutadapt version 1.18' in out)
 
 def check_docker_output(tool):
     command = 'docker run ' + tool