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  • Geisel School of Medicine
  • Hanover, NH
  • X @alos_31

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Code and course material for Gene/QBS 146: Foundations of Bioinformatics I

Jupyter Notebook 4 2 Updated Feb 26, 2025

NextSeq specific bcl2fastq2 wrapper.

Python 55 10 Updated Apr 15, 2021

Tools for handling Unique Molecular Identifiers in NGS data sets

Python 530 197 Updated Jul 10, 2025

Tutorials, assignments, and competitions for MIT Deep Learning related courses.

Jupyter Notebook 10,392 2,216 Updated Jan 3, 2024

Stripped-down version of original ESAT code

Java 6 5 Updated Jan 20, 2020
Python 27 11 Updated May 29, 2023

Functional enrichment analysis of high-throughput omics data

Dockerfile 20 11 Updated Jan 6, 2025

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

HTML 174 91 Updated Mar 23, 2021

Shiny App for comparison of samples

R 53 19 Updated Apr 29, 2024

18.06 course at MIT

Jupyter Notebook 2,949 746 Updated May 12, 2025

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

Java 13,743 2,854 Updated Oct 9, 2023

A simple utility for plotting a timeseries graph using R

JavaScript 11 3 Updated Aug 9, 2013
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