0.5.0 release

CHANGELOG.md

@@ -1,6 +1,6 @@
 # Changelog
 
-## 0.3.0-alpha.1 (unreleased)
+## 0.5.0
 
 ### Added
 
@@ -20,7 +20,7 @@
 - Added support for MPIO driver (HDF5 has to be built with H5_HAVE_PARALLEL and
   the crate has to be built with "mpio" feature enabled).
 - Added support for direct VFD driver (HDF5 has to be built with H5_HAVE_DIRECT).
-- Added some missing bindings to `libhdf5-sys`: driver-related FAPL bindings 
+- Added some missing bindings to `hdf5-sys`: driver-related FAPL bindings 
   in h5p/h5fd (including MPIO and direct VFD drivers), MPIO bindings in h5p/h5f/h5fd.
 - Added core reading/writing API in `Container`, with support for reading/writing scalars, 
   1-d, 2-d, and dynamic-dimensional arrays, and raw slices. As a side effect, the main crate
@@ -32,10 +32,13 @@
 
 ### Changed
 
+- Renamed `hdf5-rs` crate (importable as `h5`) to `hdf5` (importable simply as `hdf5`).
+- Renamed `libhdf5-sys` crate to `hdf5-sys` (importable as `hdf5_sys`).
+- Renamed GitHub repository to `aldanor/hdf5-rust`.
 - Updated the bindings and tests to the latest HDF5 versions (1.10.4 and 1.8.21).
 - The build system has been reworked from the ground up:
-  - `libhdf5-lib` crate has been removed; all of the build-time logic now resides
-    in the build script of `libhdf5-sys`.
+  - `hdf5-lib` crate has been removed; all of the build-time logic now resides
+    in the build script of `hdf5-sys`.
   - The environment variables the build script reacts to are now `HDF5_DIR` and `HDF5_VERSION`.
   - `pkg-config` is now only launched on Linux.
   - On macOS, the build scripts detects Homebrew installations, for both 1.8 and 1.10 versions.
@@ -44,7 +47,7 @@
   - A few definitions from `H5pubconf.h` are now exposed as cfg definitions, like
     `h5_have_parallel`, `h5_have_threadsafe` and `h5_have_direct` (this requires us to
     locate the include folder and parse the header at build time).
-- Various clean ups in `libhdf5-sys`: implemented `Default` and `Clone` where
+- Various clean ups in `hdf5-sys`: implemented `Default` and `Clone` where
   applicable, moved a few types and methods to matching parent modules.
 - Major refactor: trait-based type hierarchy has been replaced with a `Deref`-based
   hierarchy instead (53eff4f). `ID` and `FromID` traits have been removed. Traits like `Location`,
@@ -66,10 +69,17 @@
 
 ### Removed
 
-- Removed `libhdf5-lib` crate (merged it into `libhdf5-sys`, see above).
+- Removed `hdf5-lib` crate (merged it into `hdf5-sys`, see above).
 - Removed `remutex` crate, using locking primitives from `parking_lot` crate instead.
 - `Container` trait has been removed, all of its functionality merged into `Group` type.
 
+### Notes
+
+- The version number jump is due to renaming crates `hdf5-rs` and `libhdf5-sys` to `hdf5` and
+  `hdf5-sys`, respectively. Since there were already published crates with those names and
+  the crates registry is meant to be immutable even if the crates are yanked, we had to
+  bump the version so that it shadows all of the older versions.
+
 ## 0.2.0 (Apr 17, 2016)
 
 ### Added
@@ -81,19 +91,19 @@
   the `bin` folder of HDF5 installation, the library directory will be inferred automatically.
   The official HDF5 installers add the `bin` folder to user path, so the official MSVC releases
   should just work out of the box without having to set any environment variables.
-- The library is now split into three crates: `libhdf5-lib` (requests linkage to HDF5),
-  `libhdf5-sys` (contains bindings, requires `libhdf5-lib` at build time in order to conditionally
-  enable or disable certain HDF5 functionality), and `hdf5-rs` (the user-facing crate, requires
+- The library is now split into three crates: `hdf5-lib` (requests linkage to HDF5),
+  `hdf5-sys` (contains bindings, requires `hdf5-lib` at build time in order to conditionally
+  enable or disable certain HDF5 functionality), and `hdf5` (the user-facing crate, requires
   both lower-level crates at build time).
-- Added `h5::hdf5_version` function.
+- Added `hdf5::hdf5_version` function.
 - The minimum required version of the HDF5 library is now 1.8.4.
-- Both `libhdf5-sys` and `hdf5-rs` crates can now use version attributes at compile time to
+- Both `hdf5-sys` and `hdf5` crates can now use version attributes at compile time to
   enable/disable/change functionality. All functions and definitions that appeared in HDF5 versions
-  past 1.8.4 are now conditionally enabled in `libhdf5-sys`.
+  past 1.8.4 are now conditionally enabled in `hdf5-sys`.
 - Added bindings for HDF5 functions that were added in releases 1.8.15 and 1.8.16.
 - Static global variables in HDF5 (H5E, H5P, H5T) are now linked based on HDF5 version and not
   the target platform (`_ID_g` variables were introduced in 1.8.14). When `msvc` target is used,
-  the dllimport stub prefixes are also accounted for. The constants exposed by `libhdf5-sys` are
+  the dllimport stub prefixes are also accounted for. The constants exposed by `hdf5-sys` are
   now of reference type and need to be dereferenced upon use (for `msvc`, they have to be
   dereferenced twice).
 

Cargo.toml

@@ -1,39 +1,36 @@
 [package]
-name = "hdf5-rs"
-version = "0.2.0"
+name = "hdf5"
+version = "0.5.0"
 authors = ["Ivan Smirnov <[email protected]>"]
 keywords = ["hdf5"]
 license = "MIT/Apache-2.0"
 readme = "README.md"
 description = "Thread-safe Rust bindings for the HDF5 library."
-repository = "https://github.com/aldanor/hdf5-rs"
-homepage = "https://github.com/aldanor/hdf5-rs"
+repository = "https://github.com/aldanor/hdf5-rust"
+homepage = "https://github.com/aldanor/hdf5-rust"
 build = "build.rs"
 edition = "2018"
 
-[lib]
-name = "h5"
-
 [features]
 default = []
-mpio = ["mpi-sys", "libhdf5-sys/mpio"]
+mpio = ["mpi-sys", "hdf5-sys/mpio"]
 
 [workspace]
-members = ["hdf5-types", "hdf5-derive", "libhdf5-sys"]
+members = ["hdf5-types", "hdf5-derive", "hdf5-sys"]
 exclude = ["*.yml", "ci/*"]
 
 [dependencies]
 bitflags = "1.0"
-lazy_static = "1.2"
+lazy_static = "1.3"
 libc = "0.2"
 parking_lot = "0.7"
 ndarray = "0.12"
 num-integer = "0.1"
 num-traits = "0.2"
 mpi-sys = { version = "0.1", optional = true }
-libhdf5-sys = { path = "libhdf5-sys", version = "0.2.0" }
-hdf5-types = { path = "hdf5-types", version = "0.2.0" }
-hdf5-derive = { path = "hdf5-derive", version = "0.2.0" }
+hdf5-sys = { path = "hdf5-sys", version = "0.5.0" }
+hdf5-types = { path = "hdf5-types", version = "0.5.0" }
+hdf5-derive = { path = "hdf5-derive", version = "0.5.0" }
 
 [dev-dependencies]
 mashup = "0.1"
@@ -43,4 +40,4 @@ scopeguard = "1.0"
 tempdir = "0.3"
 
 [build-dependencies]
-libhdf5-sys = { path = "libhdf5-sys", version = "0.2.0" }
+hdf5-sys = { path = "hdf5-sys", version = "0.5.0" }

README.md

@@ -1,39 +1,47 @@
-# hdf5-rs
+# `hdf5`
 
-[![Build Status](https://img.shields.io/travis/aldanor/hdf5-rs.svg)](https://travis-ci.org/aldanor/hdf5-rs) [![Appveyor Build Status](https://img.shields.io/appveyor/ci/aldanor/hdf5-rs.svg)](https://ci.appveyor.com/project/aldanor/hdf5-rs)
+[![Build Status](https://img.shields.io/travis/aldanor/hdf5-rust.svg)](https://travis-ci.org/aldanor/hdf5-rust) [![Appveyor Build Status](https://img.shields.io/appveyor/ci/aldanor/hdf5-rust.svg)](https://ci.appveyor.com/project/aldanor/hdf5-rust)
 
-[Documentation](https://docs.rs/crate/hdf5-rs)
-[Changelog](https://github.com/aldanor/hdf5-rs/blob/master/CHANGELOG.md)
+[Documentation](https://docs.rs/crate/hdf5)
+[Changelog](https://github.com/aldanor/hdf5-rust/blob/master/CHANGELOG.md)
 
-Thread-safe Rust bindings and high-level wrappers for the HDF5 library API.
+The `hdf5` crate (previously known as `hdf5-rs`) provides thread-safe Rust bindings and 
+high-level wrappers for the HDF5 library API. Some of the features include:
+
+- Thread-safety with non-threadsafe libhdf5 builds guaranteed via reentrant mutexes.
+- Native representation of most HDF5 types, including variable-length strings and arrays.
+- Derive-macro for automatic mapping of user structs and enums to HDF5 types.
+- Multi-dimensional array reading/writing interface via `ndarray`.
+
+Direct low-level bindings are also available and are provided in the `hdf5-sys` crate.
 
 Requires HDF5 library of version 1.8.4 or later.
 
 ## Example
 
 ```rust
-#[derive(h5::H5Type, Clone, PartialEq, Debug)]
+#[derive(hdf5::H5Type, Clone, PartialEq, Debug)]
 #[repr(u8)]
 pub enum Color {
     RED = 1,
     GREEN = 2,
     BLUE = 3,
 }
 
-#[derive(h5::H5Type, Clone, PartialEq, Debug)]
+#[derive(hdf5::H5Type, Clone, PartialEq, Debug)]
 #[repr(C)]
 pub struct Pixel {
     xy: (i64, i64),
     color: Color,
 }
 
-fn main() -> h5::Result<()> {
+fn main() -> hdf5::Result<()> {
     use self::Color::*;
     use ndarray::{arr1, arr2};
 
     {
         // write
-        let file = h5::File::open("pixels.h5", "w")?;
+        let file = hdf5::File::open("pixels.h5", "w")?;
         let colors = file.new_dataset::<Color>().create("colors", 2)?;
         colors.write(&[RED, BLUE])?;
         let group = file.create_group("dir")?;
@@ -45,7 +53,7 @@ fn main() -> h5::Result<()> {
     }
     {
         // read
-        let file = h5::File::open("pixels.h5", "r")?;
+        let file = hdf5::File::open("pixels.h5", "r")?;
         let colors = file.dataset("colors")?;
         assert_eq!(colors.read_1d::<Color>()?, arr1(&[RED, BLUE]));
         let pixels = file.dataset("dir/pixels")?;
@@ -67,12 +75,12 @@ fn main() -> h5::Result<()> {
 
 ### Platforms
 
-`hdf5-rs` is known to run on these platforms: Linux, macOS, Windows (tested on Travis CI and 
-AppVeyor, HDF5 1.8 and 1.10, system installations and conda environments).
+`hdf5` crate is known to run on these platforms: Linux, macOS, Windows (tested on Travis 
+CI and AppVeyor, HDF5 1.8 and 1.10, system installations and conda environments).
 
 ### Rust
 
-`hdf5-rs` is tested continuously for all three official release channels, and requires 
+`hdf5` crate is tested continuously for all three official release channels, and requires 
 a modern Rust compiler (e.g. of version 1.31 or later).
 
 ### HDF5
@@ -84,7 +92,7 @@ threadsafe option enabled.
 
 ### HDF5 version
 
-Build scripts for both `libhdf5-sys` and `hdf5-rs` crates check the actual version of the
+Build scripts for both `hdf5-sys` and `hdf5` crates check the actual version of the
 HDF5 library that they are being linked against, and some functionality may be conditionally
 enabled or disabled at compile time. While this allows supporting multiple versions of HDF5
 in a single codebase, this is something the library user should be aware of in case they
@@ -127,7 +135,7 @@ unless `HDF5_VERSION` is set.
 
 ### Windows
 
-`hdf5-rs` fully supports MSVC toolchain, which allows using the
+`hdf5` crate fully supports MSVC toolchain, which allows using the
 [official releases](https://www.hdfgroup.org/downloads/index.html) of
 HDF5 and is generally the recommended way to go. That being said, previous experiments have 
 shown that all tests pass on the `gnu` target as well, one just needs to be careful with 
@@ -149,6 +157,6 @@ Few things to note when building on Windows:
 
 ## License
 
-`hdf5-rs` is primarily distributed under the terms of both the MIT license and the
+`hdf5` crate is primarily distributed under the terms of both the MIT license and the
 Apache License (Version 2.0). See [LICENSE-APACHE](LICENSE-APACHE) and
 [LICENSE-MIT](LICENSE-MIT) for details.

build.rs

@@ -1,3 +1,3 @@
 fn main() {
-    libhdf5_sys::emit_cfg_flags();
+    hdf5_sys::emit_cfg_flags();
 }

hdf5-derive/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "hdf5-derive"
-version = "0.2.0"
+version = "0.5.0"
 authors = ["Ivan Smirnov <[email protected]>"]
 edition = "2018"
 
@@ -11,7 +11,7 @@ proc-macro = true
 proc-macro2 = "0.4"
 quote = "0.6"
 syn = { version = "0.15", features = ["derive", "extra-traits"]}
-hdf5-types = { path = "../hdf5-types", version = "0.2.0" }
+hdf5-types = { path = "../hdf5-types", version = "0.5.0" }
 
 [dev-dependencies]
 compiletest_rs = { version = "0.3.18", features = ["stable"] }

libhdf5-sys/Cargo.toml → hdf5-sys/Cargo.toml

@@ -1,12 +1,12 @@
 [package]
-name = "libhdf5-sys"
-version = "0.2.0"
+name = "hdf5-sys"
+version = "0.5.0"
 authors = ["Ivan Smirnov <[email protected]>"]
 keywords = ["hdf5"]
 license = "MIT/Apache-2.0"
 build = "build.rs"
-repository = "https://github.com/aldanor/hdf5-rs"
-homepage = "https://github.com/aldanor/hdf5-rs"
+repository = "https://github.com/aldanor/hdf5-rust"
+homepage = "https://github.com/aldanor/hdf5-rust"
 description = "Native bindings to the HDF5 library."
 edition = "2018"
 

hdf5-types/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "hdf5-types"
-version = "0.2.0"
+version = "0.5.0"
 authors = ["Ivan Smirnov <[email protected]>"]
 edition = "2018"
 

src/error.rs

@@ -8,7 +8,7 @@ use num_integer::Integer;
 use num_traits::{Bounded, Zero};
 use parking_lot::Mutex;
 
-use libhdf5_sys::h5e::{
+use hdf5_sys::h5e::{
     H5E_error2_t, H5Eclose_stack, H5Eget_current_stack, H5Eget_msg, H5Eprint2, H5Eset_auto2,
     H5Ewalk2, H5E_DEFAULT, H5E_WALK_DOWNWARD,
 };
@@ -304,7 +304,7 @@ where
 
 #[cfg(test)]
 pub mod tests {
-    use libhdf5_sys::h5p::{H5Pclose, H5Pcreate};
+    use hdf5_sys::h5p::{H5Pclose, H5Pcreate};
 
     use crate::globals::H5P_ROOT;
     use crate::internal_prelude::*;

src/filters.rs

@@ -1,7 +1,7 @@
 use crate::globals::H5P_DATASET_CREATE;
 use crate::internal_prelude::*;
 
-use libhdf5_sys::{
+use hdf5_sys::{
     h5p::{
         H5Pcreate, H5Pget_filter2, H5Pget_nfilters, H5Pset_deflate, H5Pset_fletcher32,
         H5Pset_scaleoffset, H5Pset_shuffle, H5Pset_szip,

src/globals.rs

@@ -5,10 +5,10 @@ use std::mem;
 use lazy_static::lazy_static;
 
 #[cfg(h5_have_direct)]
-use libhdf5_sys::h5fd::H5FD_direct_init;
+use hdf5_sys::h5fd::H5FD_direct_init;
 #[cfg(h5_have_parallel)]
-use libhdf5_sys::h5fd::H5FD_mpio_init;
-use libhdf5_sys::h5fd::{
+use hdf5_sys::h5fd::H5FD_mpio_init;
+use hdf5_sys::h5fd::{
     H5FD_core_init, H5FD_family_init, H5FD_log_init, H5FD_multi_init, H5FD_sec2_init,
     H5FD_stdio_init,
 };
@@ -19,9 +19,9 @@ use crate::internal_prelude::*;
 macro_rules! link_hid {
     ($rust_name:ident, $mod_name:ident::$c_name:ident) => {
         lazy_static! {
-            pub static ref $rust_name: ::libhdf5_sys::h5i::hid_t = {
-                h5lock!(::libhdf5_sys::h5::H5open());
-                *::libhdf5_sys::$mod_name::$c_name
+            pub static ref $rust_name: ::hdf5_sys::h5i::hid_t = {
+                h5lock!(::hdf5_sys::h5::H5open());
+                *::hdf5_sys::$mod_name::$c_name
             };
         }
     };
@@ -32,9 +32,9 @@ macro_rules! link_hid {
 macro_rules! link_hid {
     ($rust_name:ident, $mod_name:ident::$c_name:ident) => {
         lazy_static! {
-            pub static ref $rust_name: ::libhdf5_sys::h5i::hid_t = {
-                h5lock!(::libhdf5_sys::h5::H5open());
-                unsafe { *(*::libhdf5_sys::$mod_name::$c_name as *const _) }
+            pub static ref $rust_name: ::hdf5_sys::h5i::hid_t = {
+                h5lock!(::hdf5_sys::h5::H5open());
+                unsafe { *(*::hdf5_sys::$mod_name::$c_name as *const _) }
             };
         }
     };
@@ -359,7 +359,7 @@ lazy_static! {
 mod tests {
     use std::mem;
 
-    use libhdf5_sys::{h5::haddr_t, h5i::H5I_INVALID_HID};
+    use hdf5_sys::{h5::haddr_t, h5i::H5I_INVALID_HID};
 
     use super::{
         H5E_DATASET, H5E_ERR_CLS, H5P_LST_LINK_ACCESS_ID, H5P_ROOT, H5R_DSET_REG_REF_BUF_SIZE,

src/handle.rs

@@ -4,7 +4,7 @@ use std::sync::Arc;
 use lazy_static::lazy_static;
 use parking_lot::{Mutex, RwLock};
 
-use libhdf5_sys::h5i::{H5I_type_t, H5Idec_ref, H5Iget_type, H5Iinc_ref, H5Iis_valid};
+use hdf5_sys::h5i::{H5I_type_t, H5Idec_ref, H5Iget_type, H5Iinc_ref, H5Iis_valid};
 
 use crate::internal_prelude::*;
 

src/hl/container.rs

@@ -5,8 +5,8 @@ use std::ops::Deref;
 use ndarray::{Array, Array1, Array2, ArrayD, ArrayView, ArrayView1};
 use ndarray::{SliceInfo, SliceOrIndex};
 
-use libhdf5_sys::h5a::{H5Aget_space, H5Aget_storage_size, H5Aget_type, H5Aread, H5Awrite};
-use libhdf5_sys::h5d::{H5Dget_space, H5Dget_storage_size, H5Dget_type, H5Dread, H5Dwrite};
+use hdf5_sys::h5a::{H5Aget_space, H5Aget_storage_size, H5Aget_type, H5Aread, H5Awrite};
+use hdf5_sys::h5d::{H5Dget_space, H5Dget_storage_size, H5Dget_type, H5Dread, H5Dwrite};
 
 use crate::internal_prelude::*;