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Simplify Stream Interface: Add versioning code as part of normal mess…
…age reads. (#5732) Follow up to #5721. As part of the performance work, we introduced some dead code in the Versioned Airbyte Stream factory around messages skipping the actual protocol upgrade code. At that time, this was deemed ok because: - We were not using the Versioned Stream Factory's migration path and weren't going to use it for some time. (Still not using it now) - Since that PR pushed a big validation logic change, it was slightly too confusing/complex to do everything in one PR. - Since this hack would only live for a week or so, the risk was deemed low. - In this PR, we combine the new validation logic change with Versioned Airbyte factory migration path and remove any dead code.
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